View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18643_high_4 (Length: 517)
Name: NF18643_high_4
Description: NF18643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18643_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 273 - 498
Target Start/End: Complemental strand, 25329301 - 25329078
Alignment:
| Q |
273 |
tattataatattatataagagggaggggtctttgggagaaaggtaataaggacaggatgatgcattagctttaaccgtaagtaacggcatttcattactc |
372 |
Q |
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| T |
25329301 |
tattataatattatataagagggaggggtctttgggagaaaggtaataaggacaggatgatgcattagctttaaccgtaagtaacggcatttcattactc |
25329202 |
T |
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| Q |
373 |
ctatgctaattttgcccttaaatttaggatagaaagtgattaagttgctatatggtagttctcggttaagcaaatatgaagcaagaatcagatagaattt |
472 |
Q |
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| T |
25329201 |
ctatgctaattttgcccttaaatttaggatagaaagtgattaagttgatatatggtagttctcggttaagcaaatatgaagcaagaatcagatagaattt |
25329102 |
T |
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| Q |
473 |
acctctgtcatagcttaactacagtt |
498 |
Q |
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| T |
25329101 |
ac--ctgtcatagcttaactacagtt |
25329078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 94 - 201
Target Start/End: Complemental strand, 25330129 - 25330022
Alignment:
| Q |
94 |
tttgggggcattagaagaagaagaataaaggtaaagaatataaagagtagttagaacgcaacttcatcatagcgttaaattaggaatttgtatagatgtt |
193 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
25330129 |
tttgggggcattagaagaagaagaataaaggtaaagaatataaagagtagttagaacgcaacttcatcatagcgttaaattaggaatttgtgttgatgtt |
25330030 |
T |
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| Q |
194 |
attctttc |
201 |
Q |
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|||||||| |
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| T |
25330029 |
attctttc |
25330022 |
T |
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