View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18643_low_1 (Length: 842)

Name: NF18643_low_1
Description: NF18643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18643_low_1
NF18643_low_1
[»] chr5 (19 HSPs)
chr5 (1-828)||(30048294-30049122)
chr5 (418-627)||(16596445-16596654)
chr5 (307-563)||(15065483-15065739)
chr5 (665-823)||(16597894-16598047)
chr5 (669-828)||(10275516-10275674)
chr5 (651-757)||(12019839-12019945)
chr5 (651-757)||(37659777-37659883)
chr5 (13-757)||(40370126-40370854)
chr5 (651-757)||(7102875-7102981)
chr5 (13-550)||(12020029-12020567)
chr5 (651-757)||(16795219-16795325)
chr5 (651-757)||(30696346-30696452)
chr5 (13-550)||(7102253-7102791)
chr5 (13-550)||(16795409-16795947)
chr5 (672-760)||(15065838-15065926)
chr5 (36-158)||(10276156-10276279)
chr5 (36-550)||(30696536-30697051)
chr5 (14-108)||(15065189-15065283)
chr5 (13-84)||(37679243-37679314)
[»] chr3 (7 HSPs)
chr3 (13-811)||(22930185-22930968)
chr3 (664-833)||(9698555-9698724)
chr3 (637-828)||(43548694-43548885)
chr3 (669-757)||(21848178-21848266)
chr3 (651-757)||(54170845-54170951)
chr3 (13-550)||(21848363-21848901)
chr3 (13-550)||(54170223-54170761)
[»] chr8 (15 HSPs)
chr8 (310-564)||(17784785-17785040)
chr8 (669-828)||(1287806-1287965)
chr8 (323-550)||(41946556-41946783)
chr8 (36-258)||(10682976-10683199)
chr8 (651-757)||(201185-201291)
chr8 (651-757)||(316022-316128)
chr8 (651-757)||(30409304-30409410)
chr8 (651-757)||(43810984-43811090)
chr8 (13-550)||(200563-201101)
chr8 (13-550)||(315400-315938)
chr8 (651-757)||(28647461-28647567)
chr8 (323-521)||(28647680-28647878)
chr8 (13-550)||(30408682-30409220)
chr8 (13-550)||(43810362-43810900)
chr8 (651-757)||(41946366-41946472)
[»] chr4 (6 HSPs)
chr4 (664-833)||(27187113-27187282)
chr4 (646-828)||(31355658-31355840)
chr4 (651-759)||(43682681-43682789)
chr4 (651-757)||(44148108-44148214)
chr4 (13-550)||(44148298-44148836)
chr4 (786-831)||(25171114-25171159)
[»] chr6 (11 HSPs)
chr6 (316-564)||(23254770-23255018)
chr6 (13-368)||(17889509-17889865)
chr6 (651-757)||(8319005-8319111)
chr6 (651-757)||(17880980-17881086)
chr6 (651-757)||(27571233-27571339)
chr6 (13-105)||(23255230-23255322)
chr6 (13-550)||(8318383-8318921)
chr6 (655-757)||(17160643-17160745)
chr6 (651-828)||(21414100-21414277)
chr6 (675-748)||(23254611-23254684)
chr6 (205-550)||(27570804-27571149)
[»] chr2 (7 HSPs)
chr2 (671-828)||(13270049-13270206)
chr2 (663-747)||(42515385-42515469)
chr2 (651-757)||(8051942-8052048)
chr2 (651-757)||(36671601-36671707)
chr2 (669-826)||(17256261-17256418)
chr2 (13-550)||(8052132-8052670)
chr2 (13-550)||(36671791-36672329)
[»] scaffold0044 (2 HSPs)
scaffold0044 (651-757)||(48366-48472)
scaffold0044 (13-550)||(47744-48282)
[»] chr7 (4 HSPs)
chr7 (651-757)||(27757947-27758053)
chr7 (651-757)||(7943584-7943690)
chr7 (13-550)||(7942962-7943500)
chr7 (13-550)||(27758137-27758675)
[»] chr1 (5 HSPs)
chr1 (651-757)||(26312563-26312669)
chr1 (13-550)||(26312753-26313291)
chr1 (651-757)||(39794945-39795051)
chr1 (13-550)||(39795135-39795673)
chr1 (767-832)||(25589982-25590047)


Alignment Details
Target: chr5 (Bit Score: 761; Significance: 0; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 761; E-Value: 0
Query Start/End: Original strand, 1 - 828
Target Start/End: Complemental strand, 30049122 - 30048294
Alignment:
Q  1 cagatcagtagttttcatatcagtttgaaatgtcctattctttgcaaggggatttttcagaactaacctttgattcttatcaaaaaatttcaaagagtta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||||    
T  30049122 cagatcagtagttttcatatcagtttgaaatgtcctattctttgcaaggggagttttcagaactaacctttgatttttatcaaacaatttcaaagagtta 30049023  T
Q  101 tccttcattgtt-ctgaatagcccttttgcataaattgacctacactcaacaagttgcattacatccccataatataaatcacatcttaaattactatta 199  Q
    |||||||||||| ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30049022 tccttcattgttactgaatagcccttttgcaccaattgacctacactcaacaagttgcattacatccccataatataaatcacatcttaaattactatta 30048923  T
Q  200 attttccattctttctttcaataacaatctttcccataccttttccaactagtgttctatgatatgcaagcttcaccttgctgtttcttctagtgttgat 299  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  30048922 attttccattctttctttcaataacaatctttcccatgccttttccaactagtgttctatgatatgcaagcttcaccttgctgtttcttcccgtgttgat 30048823  T
Q  300 ttctttcaaccaattcttatttgcagtcatatgattagaacaaccattatctaaaaaccatctatctgacttgcgactttcattattggttgttttcacc 399  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  30048822 ttctttcaaccaattcttatttgcagtcatatgattagaacaaccattatctaaaaaccatctatctgacttacgactttcattattggttgttttcacc 30048723  T
Q  400 attaacaagactgtatcataatctaaatcttcttgtgaaagtatggcttgttcctcttcattctttacttgcttccgtttaccagtccaacattcagaag 499  Q
    ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  30048722 attaacaagactgcatcataatctaaatcttcttgtgaaagtttggcttgttcctcttcattctttacttgcttccgtttaccggtccaacattcagaag 30048623  T
Q  500 cataatgaccaaacttttcacaattataacaacatatcttcttcttatcaaagcctttcttcttgccttgataattaccataacctcctccttttgaaga 599  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  30048622 cataatgaccaaacttttcacaattataacaacatatcttcttcttatcaaagcctttcttcttgccttgataattaccagaacctcctccttttgaaga 30048523  T
Q  600 ttcagttttatcactggctttgttcttctctttagaatttgaccagtttcgcccttagagttacttttgcctttcttgaaattctttttatcatattcat 699  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30048522 ttcagttttatcactggctttgttcttctctttagaatttgaccagtttcgcccttagagttacttttgcctttcttgaaattctttttatcatattcat 30048423  T
Q  700 ccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttcagacattattaattcacgtgcctccaaagaactctgcatttc 799  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  30048422 ccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttcagacattattaattcacgtgcctccaatgaactctgcatttc 30048323  T
Q  800 ttcaattttcaaagtttgcacatcctttg 828  Q
    ||||||||||||||||| |||||||||||    
T  30048322 ttcaattttcaaagttttcacatcctttg 30048294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 418 - 627
Target Start/End: Original strand, 16596445 - 16596654
Alignment:
Q  418 taatctaaatcttcttgtgaaagtatggcttgttcctcttcattctttacttgcttccgtttaccagtccaacattcagaagcataatgaccaaactttt 517  Q
    |||||| |||||||||||  |||| |  ||||||||||||| ||||||  |||||||| ||||||||||||||| ||||||||||||||||||||  |||    
T  16596445 taatctgaatcttcttgttcaagtttaacttgttcctcttctttctttgattgcttccttttaccagtccaacactcagaagcataatgaccaaatattt 16596544  T
Q  518 cacaattataacaacatatcttcttcttatcaaagcctttcttcttgccttgataattaccataacctcctccttttgaagattcagttttatcactggc 617  Q
    | |||||||||||   || ||||||||||||||| ||  |||| |||||||| ||||| ||| | |||||||||||||||||||||| ||| || || ||    
T  16596545 ctcaattataacattgtaccttcttcttatcaaaacccctctttttgccttggtaatttccaaagcctcctccttttgaagattcagctttgtcgctagc 16596644  T
Q  618 tttgttcttc 627  Q
    ||| ||||||    
T  16596645 tttcttcttc 16596654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 307 - 563
Target Start/End: Original strand, 15065483 - 15065739
Alignment:
Q  307 aaccaattcttatttgcagtcatatgattagaacaaccattatctaaaaaccatctatctgacttgcgactttcattattggttgttttcaccattaaca 406  Q
    ||||||| ||||||| ||||||||||||||||||||||| || |||| |||||||| ||||| ||||  || |||||| | |||||| | ||||| || |    
T  15065483 aaccaatccttattttcagtcatatgattagaacaaccagtaactaagaaccatctttctgaattgcagctctcattactagttgttgtaaccatcaata 15065582  T
Q  407 agactgtatcataatctaaatcttcttgtgaaagtatggcttgttcctcttcattctttacttgcttccgtttaccagtccaacattcagaagcataatg 506  Q
    | | ||| ||| ||||| |||| ||||| | ||   | ||||||||||| ||||||||| ||||||| | |||||||| ||||||||| |||||| | ||    
T  15065583 acattgtgtcagaatctgaatcctcttgagcaatcttagcttgttcctcatcattctttgcttgctttcctttaccagaccaacattcggaagcaaagtg 15065682  T
Q  507 accaaacttttcacaattataacaacatatcttcttcttatcaaagcctttcttctt 563  Q
    | |||| |||||||| ||| ||||    |||||||||||||||||  ||||||||||    
T  15065683 atcaaaattttcacatttaaaacattgaatcttcttcttatcaaaatctttcttctt 15065739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 665 - 823
Target Start/End: Original strand, 16597894 - 16598047
Alignment:
Q  665 tttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttcagacatt 764  Q
    ||||||||||||||||||||| ||||||||  |||| |||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||           
T  16597894 tttgcctttcttgaaattcttcttatcataaccatctttcttcacagtttgaacttgcaaagcttgttgaatttatctttcactgcttctttc-----cc 16597988  T
Q  765 attaattcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatc 823  Q
    || |||||| |||| ||||||||||||| || ||||| ||| |||||||||| ||||||    
T  16597989 atcaattcatgtgcttccaaagaactcttcagttcttgaatcttcaaagttttcacatc 16598047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 669 - 828
Target Start/End: Complemental strand, 10275674 - 10275516
Alignment:
Q  669 cctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttcagacattatta 768  Q
    ||||||||||| || ||| ||||||  ||||||||||| | ||||||||||||||  ||||||||||||||||||| ||| ||||||||||  |  || |    
T  10275674 cctttcttgaagttatttctatcattatcatccttcttgatagtttgaacttgtagggcttgttgaattgatcttt-actgcttctttcagttaccatca 10275576  T
Q  769 attcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatcctttg 828  Q
    ||||| |||| ||||| |||||||||| ||| ||||| ||||| || | |||||||||||    
T  10275575 attcatgtgcttccaatgaactctgcaattcctcaatcttcaatgtcttcacatcctttg 10275516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 651 - 757
Target Start/End: Complemental strand, 12019945 - 12019839
Alignment:
Q  651 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 750  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| ||||||||||| | |||||||||||| || ||||||||||||||||||||| | |    
T  12019945 cccttagagtttttctttcctttcttgaagttcttcctatcataatcatccttcttgatagtttgaacttgcaaggcttgttgaattgatctttcattgc 12019846  T
Q  751 ttctttc 757  Q
    |||||||    
T  12019845 ttctttc 12019839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 651 - 757
Target Start/End: Complemental strand, 37659883 - 37659777
Alignment:
Q  651 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 750  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| ||||||||||| | |||||||||||| || ||||||||||||||||||||| | |    
T  37659883 cccttagagtttttctttcctttcttgaagttcttcctatcataatcatccttcttgatagtttgaacttgcaaggcttgttgaattgatctttcattgc 37659784  T
Q  751 ttctttc 757  Q
    |||||||    
T  37659783 ttctttc 37659777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 13 - 757
Target Start/End: Original strand, 40370126 - 40370854
Alignment:
Q  13 tttcatatcagtttgaaatgtcctattctttgcaaggggatttttcagaactaacctttgattcttatcaaaaaatttcaaagagttatccttcattgtt 112  Q
    ||||||||  || ||||| || |||||||||||||| ||| |||||| ||||||||||||||  |||||||| || || || | ||| |||||||| ||     
T  40370126 tttcatattggtctgaaaagttctattctttgcaagaggagttttcaaaactaacctttgatgattatcaaacaacttaaaggtgttgtccttcatagta 40370225  T
Q  113 -ctgaatagcccttttgcataaattgacctacactcaacaagttgcattacatccccataatataaatcacatcttaaattactattaattttccattct 211  Q
     |||| || || || || || |||||||||||||||| ||||||||| | ||| ||   || ||| |  || |||| ||||| |   | ||| |||||||    
T  40370226 actgagtatcctttatgaatgaattgacctacactcagcaagttgcactgcattccaggaacatagagaacttcttcaattattgccactttcccattct 40370325  T
Q  212 ttctttcaataacaatctttcccataccttttccaactagtgttctatgatatgcaagcttcaccttgctgtttcttctagtgttgatttctttcaacca 311  Q
    ||| ||||||| |||| || ||||| |||| | ||||||    |||||||| |||||| ||||||||  ||||||||||||  |  | |||| | ||| |    
T  40370326 ttccttcaatagcaatgttccccattccttctgcaactaagactctatgatctgcaagtttcacctttgtgtttcttctagaatccacttctcttaacaa 40370425  T
Q  312 attcttatttgcagtcatatgattagaacaaccattatctaaaaaccatctatctgacttgcgactttcattattggttgttttcaccattaacaagact 411  Q
      ||| | || ||||||||||||||||||||||| ||||||| ||||| || ||||| |||   || |||||| | |||||| | ||||| |  || | |    
T  40370426 tgtctgagttccagtcatatgattagaacaaccagtatctaagaaccaactttctgaattggagctctcattactagttgttgtaaccatcatgaataat 40370525  T
Q  412 gtatcataatctaaatcttcttgtgaaagtatggcttgttcctcttcattctttacttgcttccgtttaccagtccaacattcagaagcataatgaccaa 511  Q
    |  ||| ||||| |||| ||||| | || | |||||| ||| || |||||||||  |||||| | ||||| || |||||||||| | |||||||| ||||    
T  40370526 gactcagaatctgaatcatcttgagcaattttggcttcttcttcatcattctttgattgctttcctttactagaccaacattcaaaggcataatgtccaa 40370625  T
Q  512 acttttcacaattataacaacatatcttcttcttatcaaagcctttcttcttgccttgataattaccataacctcctccttttgaagattcagttttatc 611  Q
    | || ||||| ||  ||||    ||||||||||||||||   ||||||||||   ||||| |       ||  |||| | ||||||||||||  ||| ||    
T  40370626 atttctcacatttgaaacactgaatcttcttcttatcaa---ctttcttctt---ttgattag------aatttccttcctttgaagattcacctttgtc 40370713  T
Q  612 actggctttgttcttctctttagaatttgaccagtttcg-cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcaca 710  Q
    |    | ||||||||  |||||||      ||||||||  |||||||||||  | || ||||||||||| |||||  ||||||| ||||||||||| | |    
T  40370714 agatccattgttcttgcctttaga------ccagtttcctcccttagagtttttcttccctttcttgaagttcttcctatcataatcatccttcttgata 40370807  T
Q  711 gtttgaacttgtaaagcttgttgaattgatctttcactacttctttc 757  Q
    ||||||||||| |  ||||||||||||||| ||||| | ||||||||    
T  40370808 gtttgaacttgcagggcttgttgaattgatttttcattgcttctttc 40370854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 651 - 757
Target Start/End: Original strand, 7102875 - 7102981
Alignment:
Q  651 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 750  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| |||||||| || | |||||||||||| |  ||||||||||||||||||||| | |    
T  7102875 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 7102974  T
Q  751 ttctttc 757  Q
    |||||||    
T  7102975 ttctttc 7102981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 13 - 550
Target Start/End: Complemental strand, 12020567 - 12020029
Alignment:
Q  13 tttcatatcagtttgaaatgtcctattctttgcaaggggatttttcagaactaacctttgattcttatcaaaaaatttcaaagagttatccttcattgt- 111  Q
    ||||||||  || ||||| || |||||||||||||| ||| |||||| ||||||||||||||  |||||||| || || || | ||| |||||||| ||     
T  12020567 tttcatattggtctgaaaggttctattctttgcaagaggagttttcaaaactaacctttgatgattatcaaacaacttaaaggtgttgtccttcatagta 12020468  T
Q  112 tctgaatagcccttttgcataaattgacctacactcaacaagttgcattacatccccataatataaatcacatcttaaattactattaattttccattct 211  Q
     |||| || || || || || || ||||||||||||| ||| ||||| | ||| ||   |||||| |  || |||| ||||| |   | ||| |||||||    
T  12020467 actgagtatcctttctgaatgaactgacctacactcagcaaattgcactgcattccaggaatatagagaacttcttcaattattgccactttcccattct 12020368  T
Q  212 ttctttcaataacaatctttcccataccttttccaactagtgttctatgatatgcaagcttcaccttgctgtttcttctagtgttgatttctttcaacca 311  Q
    ||| ||||||| |||| || ||||| |||| | ||| ||    |||||||| |||||| ||||||||  | ||||||| ||  |  | |||| | |||||    
T  12020367 ttccttcaatagcaatattccccattccttctgcaattaagactctatgatctgcaagtttcacctttgtatttcttccaggatccacttctcttaacca 12020268  T
Q  312 attcttatttgcagtcatatgattagaacaaccattatctaaaaaccatctatctgacttgcgactttcattattggttgttttcaccattaacaagact 411  Q
      |||| ||| | ||||| ||||||||||||||| ||||||| ||||| || ||||| ||||  || |||||| | |||||| | ||||| |  || | |    
T  12020267 tgtcttgtttcctgtcatgtgattagaacaaccagtatctaagaaccaactttctgaattgcagctctcattactagttgttgtaaccatcatgaataat 12020168  T
Q  412 gtatcataatctaaatcttcttgtgaaagtatggcttgttcctcttcattctttacttgcttccgtttaccagtccaacattcagaagcataatgaccaa 511  Q
    |  ||| ||||| |||| ||||||| || | ||||||  || || ||||| |||  |||||| | |||||||| |||||||||||| ||||| || ||||    
T  12020167 gattcagaatctgaatcatcttgtgcaattttggcttcctcttcatcattttttgattgctttcctttaccagaccaacattcagaggcatagtgtccaa 12020068  T
Q  512 acttttcacaattataacaacatatcttcttcttatcaa 550  Q
    | || ||||| ||  ||||    ||||||||||||||||    
T  12020067 atttctcacatttgaaacactgaatcttcttcttatcaa 12020029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 651 - 757
Target Start/End: Complemental strand, 16795325 - 16795219
Alignment:
Q  651 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 750  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| |||||||| || | |||||||||||| |  ||||||||||||||||||||| | |    
T  16795325 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 16795226  T
Q  751 ttctttc 757  Q
    |||||||    
T  16795225 ttctttc 16795219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 651 - 757
Target Start/End: Complemental strand, 30696452 - 30696346
Alignment:
Q  651 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 750  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| ||||||||||| | |||||||||||| |  |||||| |||||||||||||| | |    
T  30696452 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatccttcttgatagtttgaacttgcagggcttgtcgaattgatctttcattgc 30696353  T
Q  751 ttctttc 757  Q
    |||||||    
T  30696352 ttctttc 30696346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 550
Target Start/End: Original strand, 7102253 - 7102791
Alignment:
Q  13 tttcatatcagtttgaaatgtcctattctttgcaaggggatttttcagaactaacctttgattcttatcaaaaaatttcaaagagttatccttcattgt- 111  Q
    ||||||||  || ||||| || |||||||||||||| ||| |||||| ||||||||||||||  |||||||| || || || | ||| |||||||| ||     
T  7102253 tttcatattggtctgaaaagttctattctttgcaagaggagttttcaaaactaacctttgatgattatcaaacaacttaaaggtgttgtccttcatagta 7102352  T
Q  112 tctgaatagcccttttgcataaattgacctacactcaacaagttgcattacatccccataatataaatcacatcttaaattactattaattttccattct 211  Q
     |||| || || || || || || ||||||||||||| ||| ||||| | ||| ||   || ||| |  || |||| ||||| |   | ||| |||||||    
T  7102353 actgagtatcctttctgaatgaactgacctacactcagcaaattgcactgcattccaggaacatagagaacttcttcaattattgccactttcccattct 7102452  T
Q  212 ttctttcaataacaatctttcccataccttttccaactagtgttctatgatatgcaagcttcaccttgctgtttcttctagtgttgatttctttcaacca 311  Q
    ||| ||||||| |||| || ||||| |||| | |||| |    |||||||| |||||||||||||||  | ||||||| ||  |  | |||| | |||||    
T  7102453 ttccttcaatagcaatattccccattccttctgcaaccaagactctatgatctgcaagcttcacctttgtatttcttccaggatccacttctcttaacca 7102552  T
Q  312 attcttatttgcagtcatatgattagaacaaccattatctaaaaaccatctatctgacttgcgactttcattattggttgttttcaccattaacaagact 411  Q
      |||| ||| | ||||| ||||||||||||||| ||||||| ||||| || ||||| ||||  || |||||| | |||||| | ||||| |  || | |    
T  7102553 tgtcttgtttcctgtcatgtgattagaacaaccagtatctaagaaccaactttctgaattgcagctctcattactagttgttgtaaccatcatgaataat 7102652  T
Q  412 gtatcataatctaaatcttcttgtgaaagtatggcttgttcctcttcattctttacttgcttccgtttaccagtccaacattcagaagcataatgaccaa 511  Q
    |  ||| ||||| |||| ||||||| || | ||||||  || || ||||| |||  |||||| | |||||||| ||| |||||||| ||||| || ||||    
T  7102653 gattcagaatctgaatcatcttgtgcaattttggcttcctcttcatcattttttgattgctttcctttaccagaccagcattcagaggcatagtgtccaa 7102752  T
Q  512 acttttcacaattataacaacatatcttcttcttatcaa 550  Q
    | || ||||| ||  ||||    ||||||||||||||||    
T  7102753 atttctcacatttgaaacactgaatcttcttcttatcaa 7102791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 550
Target Start/End: Complemental strand, 16795947 - 16795409
Alignment:
Q  13 tttcatatcagtttgaaatgtcctattctttgcaaggggatttttcagaactaacctttgattcttatcaaaaaatttcaaagagttatccttcattgt- 111  Q
    ||||||||  || ||||| || |||||||||||||| ||| |||||| ||||||||||||||  |||||||| || || || | ||| |||||||| ||     
T  16795947 tttcatattggtctgaaaagttctattctttgcaagaggagttttcaaaactaacctttgatgattatcaaacaacttaaaggtgttgtccttcatagta 16795848  T
Q  112 tctgaatagcccttttgcataaattgacctacactcaacaagttgcattacatccccataatataaatcacatcttaaattactattaattttccattct 211  Q
     |||| || || || || || || ||||||||||||| ||| ||||| | ||| ||   || ||| |  || |||| ||||| |   | ||| |||||||    
T  16795847 actgagtatcctttctgaatgaactgacctacactcagcaaattgcactgcattccaggaacatagagaacttcttcaattattgccactttcccattct 16795748  T
Q  212 ttctttcaataacaatctttcccataccttttccaactagtgttctatgatatgcaagcttcaccttgctgtttcttctagtgttgatttctttcaacca 311  Q
    ||| ||||||| |||| || ||||| |||| | |||| |    |||||||| |||||||||||||||  | ||||||| ||  |  | |||| | |||||    
T  16795747 ttccttcaatagcaatattccccattccttctgcaaccaagactctatgatctgcaagcttcacctttgtatttcttccaggatccacttctcttaacca 16795648  T
Q  312 attcttatttgcagtcatatgattagaacaaccattatctaaaaaccatctatctgacttgcgactttcattattggttgttttcaccattaacaagact 411  Q
      |||| ||| | ||||| ||||||||||||||| ||||||| ||||| || ||||| ||||  || |||||| | |||||| | ||||| |  || | |    
T  16795647 tgtcttgtttcctgtcatgtgattagaacaaccagtatctaagaaccaactttctgaattgcagctctcattactagttgttgtaaccatcatgaataat 16795548  T
Q  412 gtatcataatctaaatcttcttgtgaaagtatggcttgttcctcttcattctttacttgcttccgtttaccagtccaacattcagaagcataatgaccaa 511  Q
    |  ||| ||||| |||| ||||||| || | ||||||  || || ||||| |||  |||||| | |||||||| ||| |||||||| ||||| || ||||    
T  16795547 gattcagaatctgaatcatcttgtgcaattttggcttcctcttcatcattttttgattgctttcctttaccagaccagcattcagaggcatagtgtccaa 16795448  T
Q  512 acttttcacaattataacaacatatcttcttcttatcaa 550  Q
    | || ||||| ||  ||||    ||||||||||||||||    
T  16795447 atttctcacatttgaaacactgaatcttcttcttatcaa 16795409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 672 - 760
Target Start/End: Original strand, 15065838 - 15065926
Alignment:
Q  672 ttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttcaga 760  Q
    |||||||| |||||||||||| | ||||| |||||||  || |||||||| || |||||||||||| || ||||||| ||||| |||||    
T  15065838 ttcttgaagttctttttatcagaatcatctttcttcatggtctgaacttgcaaggcttgttgaattcatatttcactgcttctctcaga 15065926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 36 - 158
Target Start/End: Complemental strand, 10276279 - 10276156
Alignment:
Q  36 tattctttgcaaggggatttttcagaactaacctttgattcttatcaaaaaatttcaaagagttatccttcattgt-tctgaatagcccttttgcataaa 134  Q
    ||||||||||||| ||| |||||| ||||||||||||||  |||||||| ||||| || | ||| |||||||| ||  |||| || || || || || ||    
T  10276279 tattctttgcaagaggagttttcaaaactaacctttgataattatcaaacaatttaaaggtgttgtccttcatagtaactgagtatcctttctgaatgaa 10276180  T
Q  135 ttgacctacactcaacaagttgca 158  Q
    ||||| |||||||| |||||||||    
T  10276179 ttgacatacactcagcaagttgca 10276156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 36 - 550
Target Start/End: Complemental strand, 30697051 - 30696536
Alignment:
Q  36 tattctttgcaaggggatttttcagaactaacctttgattcttatcaaaaaatttcaaagagttatccttcattgt-tctgaatagcccttttgcataaa 134  Q
    ||||||||||||| ||| |||||| ||||||||||||||  |||||||| || || || | ||| |||||||| ||  |||| || || || || || ||    
T  30697051 tattctttgcaagaggagttttcaaaactaacctttgatgattatcaaacaacttaaaggtgttgtccttcatagtaactgagtatcctttctgaatgaa 30696952  T
Q  135 ttgacctacactcaacaagttgcattacatccccataatataaatcacatcttaaattactattaattttccattctttctttcaataacaatctttccc 234  Q
    |||||||||||||| ||| ||||| | ||| ||   || ||| |  || | || ||||| |   | ||| |||||||||| ||||||| |||| || |||    
T  30696951 ttgacctacactcagcaaattgcactgcattccaggaacatagagaacttattcaattattgccactttcccattctttccttcaatagcaatattcccc 30696852  T
Q  235 ataccttttccaactagtgttctatgatatgcaagcttcaccttgctgtttcttctagtgttgatttctttcaaccaattcttatttgcagtcatatgat 334  Q
    || |||| | |||||| |  |||||||| |||||| ||||||||  ||||||||| |   |  | |||| | |||||  ||||  || ||||||||||||    
T  30696851 attccttctgcaactaatactctatgatctgcaagtttcacctttgtgtttcttccaaaatccacttctcttaaccatgtcttggttccagtcatatgat 30696752  T
Q  335 tagaacaaccattatctaaaaaccatctatctgacttgcgactttcattattggttgttttcaccattaacaagactgtatcataatctaaatcttcttg 434  Q
    ||||  ||||| ||||||| ||||| || ||||| ||||  || |||||| |  ||||| | ||||| |  || | ||  ||| ||||| |||| |||||    
T  30696751 tagattaaccagtatctaagaaccaactttctgaattgcagctctcattactaattgttgtaaccatcatgaataatgactcagaatctgaatcatcttg 30696652  T
Q  435 tgaaagtatggcttgttcctcttcattctttacttgcttccgtttaccagtccaacattcagaagcataatgaccaaacttttcacaattataacaacat 534  Q
    || || | ||||||  || || ||||| |||  |||||| | |||||||| |||||||||||| ||||| || ||||| || ||||| ||  ||||        
T  30696651 tgcaattttggcttcctcttcatcattatttgattgctttcctttaccagaccaacattcagaggcatagtgtccaaatttctcacatttgaaacactga 30696552  T
Q  535 atcttcttcttatcaa 550  Q
    ||||||||||||||||    
T  30696551 atcttcttcttatcaa 30696536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 108
Target Start/End: Original strand, 15065189 - 15065283
Alignment:
Q  14 ttcatatcagtttgaaatgtcctattctttgcaaggggatttttcagaactaacctttgattcttatcaaaaaatttcaaagagttatccttcat 108  Q
    ||||||||| ||||||| ||  |||||||||||| |||| ||  ||  | ||||||||||  ||||||||| | |||||||||||||||||||||    
T  15065189 ttcatatcattttgaaaggttatattctttgcaatgggagttgccaacattaacctttgaggcttatcaaacagtttcaaagagttatccttcat 15065283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 37679314 - 37679243
Alignment:
Q  13 tttcatatcagtttgaaatgtcctattctttgcaaggggatttttcagaactaacctttgattcttatcaaa 84  Q
    ||||||||  || ||||| || |||||||||||||| ||| |||||| ||||||||||||||  ||||||||    
T  37679314 tttcatattggtctgaaaagttctattctttgcaagaggagttttcaaaactaacctttgatgattatcaaa 37679243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 127; Significance: 4e-65; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 13 - 811
Target Start/End: Original strand, 22930185 - 22930968
Alignment:
Q  13 tttcatatcagtttgaaatgtcctattctttgcaaggggatttttcagaactaacctttgattcttatcaaaaaatttcaaagagttatccttcattgtt 112  Q
    |||||||||||| | ||||||  ||||||||||||||||| |||||| |||||||||||||||||||||||| || |||||||| ||||||||||| |||    
T  22930185 tttcatatcagtctaaaatgttttattctttgcaaggggagttttcataactaacctttgattcttatcaaacaacttcaaagaattatccttcatagtt 22930284  T
Q  113 ct-gaatagcccttttgcataaattgacctacactcaacaagttgcattacatccccataatataaatcacatcttaaattactattaattttccattct 211  Q
     | || || ||||| || |  |||||||| ||||| | ||||||||||  |     ||||      |  ||||||| |||||| | |||| ||| |||||    
T  22930285 atcgagtaacccttctgaaccaattgaccaacacttagcaagttgcataccgggggcatag-----agaacatcttcaattacaactaatcttcaattct 22930379  T
Q  212 ttctttcaataacaatctttcccataccttttccaactagtgttctatgatatgcaagcttcaccttgctgtttcttctagtgttgatttctttcaacca 311  Q
    ||| |||||||   ||||||||||| |||| | |||||| |||| ||||||   |||||||||||||| | ||  | | ||  | ||||||||| ||| |    
T  22930380 ttccttcaatagatatctttcccatgccttctgcaactaatgttgtatgatcaacaagcttcaccttggtattcttccaaggatcgatttcttttaacaa 22930479  T
Q  312 attcttatttgcagtcatatgattagaacaaccattatctaaaaaccatctatctgacttgcgactttcattattggttgttttcaccattaacaagact 411  Q
    |||||||||   |||||| || ||| | ||| || ||||||| |||||||| | ||| ||||  || ||| || || ||||| ||||||| |||||||||    
T  22930480 attcttattaaaagtcatgtggttaaatcaaacagtatctaagaaccatctttttgaattgcagctctcagtactgattgttgtcaccatcaacaagact 22930579  T
Q  412 gtatcataatctaaatcttcttgtgaaagtatggcttgttcctcttcattctttacttgcttccgtttaccagtccaacattcagaagcataatgaccaa 511  Q
    || ||| ||||||| ||||||| || ||   | || |||||||||||||||||||||| ||||| |||||||| ||  |||||||| |||||  |  |||    
T  22930580 gtgtcagaatctaagtcttcttttgcaatcttagcatgttcctcttcattctttactttcttccctttaccagaccggcattcagatgcatagagggcaa 22930679  T
Q  512 acttttcacaattataacaacatatcttcttcttatcaaagcctttcttcttgccttgataattaccataacctcctccttttgaagattcagttttatc 611  Q
    |||||||||||||||| ||  |   ||||||||||| ||| | ||||||||||  |||||||       ||| || |||||||||| |||||   || ||    
T  22930680 acttttcacaattatagcattaatccttcttcttatgaaaacatttcttcttgttttgataaa------aacttcatccttttgaacattcaccattttc 22930773  T
Q  612 actggctttgttcttctctttagaatttgaccagtttcg-cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcaca 710  Q
    | || |||||||||||  |||      |||||||||||  ||||| |||||| | |||||||||||||| ||||| ||| || | |||||  | || | |    
T  22930774 aatgactttgttcttccattt------tgaccagtttcctcccttggagttattcttgcctttcttgaagttcttcttaacaaaatcatctctattaata 22930867  T
Q  711 gtttgaacttgtaaagcttgttgaattgatctttcactacttctttcagacattattaattcacgtgcctccaaagaactctgcatttcttcaattttca 810  Q
    ||||||||||| ||   ||||||||||||||||||||||||||||||| |||  || |||||| |||||||||||||||| |||| ||||||||| ||||    
T  22930868 gtttgaacttgcaattgttgttgaattgatctttcactacttctttcatacaccatcaattcatgtgcctccaaagaactatgcaattcttcaatcttca 22930967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 664 - 833
Target Start/End: Complemental strand, 9698724 - 9698555
Alignment:
Q  664 ttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttcagacat 763  Q
    |||| ||||||||||| |||||  ||||||  ||||||||||| | ||||||||||||||  |||| |||||||||||||||||| ||||||||||  |     
T  9698724 ttttccctttcttgaagttcttcctatcattatcatccttcttgatagtttgaacttgtagggctttttgaattgatctttcactgcttctttcagttac 9698625  T
Q  764 tattaattcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatcctttgcttct 833  Q
     || |||||| |||| ||||| |||||||||| ||| ||||| ||||| || | ||||||||||| ||||    
T  9698624 catcaattcatgtgcttccaatgaactctgcaattcctcaatcttcaatgtcttcacatcctttgattct 9698555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 637 - 828
Target Start/End: Complemental strand, 43548885 - 43548694
Alignment:
Q  637 tttgaccagtttcgcccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaat 736  Q
    |||||||||||||  ||||||| ||  | || ||||||||||| |||||  ||||||  ||||||||||| | ||||||||||| ||  |||||||||||    
T  43548885 tttgaccagtttcctccttagaatttttcttccctttcttgaagttcttcctatcattatcatccttcttgatagtttgaacttttagggcttgttgaat 43548786  T
Q  737 tgatctttcactacttctttcagacattattaattcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatcctttg 828  Q
    |||||||||||| ||||||||||  |  ||  ||||| |||| || || |||| ||||| ||| ||||| ||||| || | |||||||||||    
T  43548785 tgatctttcactgcttctttcagttaccatcgattcatgtgcttctaatgaacactgcaattcctcaatcttcaatgtcttcacatcctttg 43548694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 669 - 757
Target Start/End: Complemental strand, 21848266 - 21848178
Alignment:
Q  669 cctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttc 757  Q
    ||||||||||| ||||| |||||||| ||||||||||| | |||||||||||| |  ||||||||||||||||||||| | ||||||||    
T  21848266 cctttcttgaagttcttcttatcataatcatccttcttgatagtttgaacttgcagggcttgttgaattgatctttcattgcttctttc 21848178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 651 - 757
Target Start/End: Original strand, 54170845 - 54170951
Alignment:
Q  651 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 750  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| ||||||||||| | |||||||||||| |  ||||||||||||||||||||| | |    
T  54170845 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatccttcttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 54170944  T
Q  751 ttctttc 757  Q
    |||||||    
T  54170945 ttctttc 54170951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 13 - 550
Target Start/End: Complemental strand, 21848901 - 21848363
Alignment:
Q  13 tttcatatcagtttgaaatgtcctattctttgcaaggggatttttcagaactaacctttgattcttatcaaaaaatttcaaagagttatccttcattgtt 112  Q
    ||||||||  || ||||| || |||||||||||||| ||| |||||| ||||||||||||||  |||||||| || || || | ||| |||||||| ||     
T  21848901 tttcatattggtctgaaaagttctattctttgcaagaggagttttcaaaactaacctttgatgattatcaaacaacttaaaggtgttgtccttcatagta 21848802  T
Q  113 -ctgaatagcccttttgcataaattgacctacactcaacaagttgcattacatccccataatataaatcacatcttaaattactattaattttccattct 211  Q
     |||| || || || || || || ||||||||||||| ||| ||||| | ||| ||   || ||| |  || |||| ||||| |   | ||| |||||||    
T  21848801 actgagtatcctttctgaatgaactgacctacactcagcaaattgcactgcattccaggaacatagagaacttcttcaattattgccactttcccattct 21848702  T
Q  212 ttctttcaataacaatctttcccataccttttccaactagtgttctatgatatgcaagcttcaccttgctgtttcttctagtgttgatttctttcaacca 311  Q
    ||| ||||||| |||| || ||||| |||| | ||| ||    |||||||| |||||| ||||||||  | ||||||| ||  |  | |||| | |||||    
T  21848701 ttccttcaatagcaatattccccattccttctgcaattaagactctatgatctgcaagtttcacctttgtatttcttccaggatccacttctcttaacca 21848602  T
Q  312 attcttatttgcagtcatatgattagaacaaccattatctaaaaaccatctatctgacttgcgactttcattattggttgttttcaccattaacaagact 411  Q
      |||| ||| | ||||| ||||||||||||||| ||||||| ||||| || ||||| ||||  || |||||| | |||||| | ||||| |  || | |    
T  21848601 tgtcttgtttcctgtcatgtgattagaacaaccagtatctaagaaccaactttctgaattgcagctctcattactagttgttgtaaccatcatgaataat 21848502  T
Q  412 gtatcataatctaaatcttcttgtgaaagtatggcttgttcctcttcattctttacttgcttccgtttaccagtccaacattcagaagcataatgaccaa 511  Q
    |  ||| |||||||||| ||||||| || | ||||||  || || ||||| |||  |||||| | |||||||| |||||||||||| ||||| || ||||    
T  21848501 gattcagaatctaaatcatcttgtgcaattttggcttcctcttcatcattttttgattgctttcctttaccagaccaacattcagaggcatagtgtccaa 21848402  T
Q  512 acttttcacaattataacaacatatcttcttcttatcaa 550  Q
    | || ||||| ||  ||||    ||||||||||||||||    
T  21848401 atttctcacatttgaaacactgaatcttcttcttatcaa 21848363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 550
Target Start/End: Original strand, 54170223 - 54170761
Alignment:
Q  13 tttcatatcagtttgaaatgtcctattctttgcaaggggatttttcagaactaacctttgattcttatcaaaaaatttcaaagagttatccttcattgt- 111  Q
    ||||||||  || ||||| || |||||||||||||| ||| |||||| ||||||||||||||  |||||||| || || || | ||| |||||||| ||     
T  54170223 tttcatattggtctgaaaagttctattctttgcaagaggagttttcaaaactaacctttgatgattatcaaacaacttaaaggtgttgtccttcatagta 54170322  T
Q  112 tctgaatagcccttttgcataaattgacctacactcaacaagttgcattacatccccataatataaatcacatcttaaattactattaattttccattct 211  Q
     |||| || || || || || || ||||||||||||| ||| ||||| | ||| ||   || ||| |  || |||| ||||| |   | ||| |||||||    
T  54170323 actgagtatcctttctgaatgaactgacctacactcagcaaattgcactgcattccaggaacatagagaacttcttcaattattgccactttcccattct 54170422  T
Q  212 ttctttcaataacaatctttcccataccttttccaactagtgttctatgatatgcaagcttcaccttgctgtttcttctagtgttgatttctttcaacca 311  Q
    ||| ||||||| |||| || ||||| |||| | |||| |    |||||||| |||||||||||||||  | ||||||| ||  |  | || | | |||||    
T  54170423 ttccttcaatagcaatattccccattccttctgcaaccaagactctatgatctgcaagcttcacctttgtatttcttccaggatccacttttcttaacca 54170522  T
Q  312 attcttatttgcagtcatatgattagaacaaccattatctaaaaaccatctatctgacttgcgactttcattattggttgttttcaccattaacaagact 411  Q
      |||| ||| | ||||| ||||||||||||||| ||||||| ||||| || ||||| ||||  || |||||| | |||||| | ||||| |  || | |    
T  54170523 tgtcttgtttcctgtcatgtgattagaacaaccagtatctaagaaccaactttctgaattgcagctctcattactagttgttgtaaccatcatgaataat 54170622  T
Q  412 gtatcataatctaaatcttcttgtgaaagtatggcttgttcctcttcattctttacttgcttccgtttaccagtccaacattcagaagcataatgaccaa 511  Q
    |  ||| ||||| |||| ||||||| || | ||||||  || || ||||| |||  |||||| | |||||||| ||| |||||||| ||||| || ||||    
T  54170623 gattcagaatctgaatcatcttgtgcaattttggcttcctcttcatcattttttgattgctttcctttaccagaccagcattcagaggcatagtgtccaa 54170722  T
Q  512 acttttcacaattataacaacatatcttcttcttatcaa 550  Q
    | || ||||| ||  ||||    ||||||||||||||||    
T  54170723 atttctcacatttgaaacactgaatcttcttcttatcaa 54170761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 4e-37; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 310 - 564
Target Start/End: Original strand, 17784785 - 17785040
Alignment:
Q  310 caattcttatttgcagtcatatgattagaacaaccattatctaaaaaccatctatctgacttgcgactttcattattggttgttttcaccattaacaaga 409  Q
    |||| ||||||| ||||||||||||||||||||||| |||||||||||||||| ||||| |||| ||| |||||| | ||| || | ||||| || || |    
T  17784785 caatccttatttccagtcatatgattagaacaaccagtatctaaaaaccatctttctgaattgcaactctcattactagtttttgtaaccatcaataaca 17784884  T
Q  410 ctgtatcataatctaaatcttcttgtg-aaagtatggcttgttcctcttcattctttacttgcttccgtttaccagtccaacattcagaagcataatgac 508  Q
    |||| | | ||||| |||||||||| | |||   | ||||||| ||| || |||||||||||||| | |||||||| ||| |||| ||||||| | ||||    
T  17784885 ctgtgtaagaatcttaatcttcttgggcaaatcttagcttgttgctcatctttctttacttgctttcctttaccagaccagcatttagaagcaaagtgac 17784984  T
Q  509 caaacttttcacaattataacaacatatcttcttcttatcaaagcctttcttcttg 564  Q
    |||| || ||||| ||| |||| |  ||||||||||||||||| ||||||||||||    
T  17784985 caaaattctcacatttaaaacaccgaatcttcttcttatcaaaacctttcttcttg 17785040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 669 - 828
Target Start/End: Complemental strand, 1287965 - 1287806
Alignment:
Q  669 cctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttcagacattatta 768  Q
    ||||||||||| |||||  ||||||  ||||||||||| | |||||||| |||||  ||||||| ||||||||||||||| ||||||||||  |  || |    
T  1287965 cctttcttgaagttcttcctatcattatcatccttcttgatagtttgaatttgtagggcttgttaaattgatctttcactgcttctttcagttaccatca 1287866  T
Q  769 attcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatcctttg 828  Q
    ||||| |||| || || |||||||||| ||| ||||| ||||| || | |||||||||||    
T  1287865 attcatgtgcttctaatgaactctgcaattcctcaatcttcaatgtcttcacatcctttg 1287806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 323 - 550
Target Start/End: Complemental strand, 41946783 - 41946556
Alignment:
Q  323 cagtcatatgattagaacaaccattatctaaaaaccatctatctgacttgcgactttcattattggttgttttcaccattaacaagactgtatcataatc 422  Q
    ||||||||||||||||||||||| ||||||| ||||| || ||||| ||||  || |||||| | |||||| | ||||| |  || | ||  ||| ||||    
T  41946783 cagtcatatgattagaacaaccaatatctaagaaccaactttctgaattgcagctctcattactagttgttgtaaccatcatgaataatgactcagaatc 41946684  T
Q  423 taaatcttcttgtgaaagtatggcttgttcctcttcattctttacttgcttccgtttaccagtccaacattcagaagcataatgaccaaacttttcacaa 522  Q
    | |||| ||||||| || | ||||||  || || |||||||||  |||||| | |||||||| |||||||||||| |||||||| ||||| || |||||     
T  41946683 tgaatcatcttgtgcaattttggcttcctcttcatcattctttgattgctttcctttaccagaccaacattcagaggcataatgtccaaatttctcacat 41946584  T
Q  523 ttataacaacatatcttcttcttatcaa 550  Q
    ||  ||||    ||||||||||||||||    
T  41946583 ttgaaacactgaatcttcttcttatcaa 41946556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 36 - 258
Target Start/End: Original strand, 10682976 - 10683199
Alignment:
Q  36 tattctttgcaaggggatttttcagaactaacctttgattcttatcaaaaaatttcaaagagttatccttcattgttct-gaatagcccttttgcataaa 134  Q
    |||| |||||||| ||| |||||| ||||||||||||||| |||||||  | ||||||||| |||  | ||||| || | || || || ||||||| ||     
T  10682976 tattttttgcaagaggagttttcaaaactaacctttgatttttatcaaccagtttcaaagaattaaacatcattattattgagtaacctttttgcacaag 10683075  T
Q  135 ttgacctacactcaacaagttgcattacatccccataatataaatcacatcttaaattactattaattttccattctttctttcaataacaatctttccc 234  Q
    |||||||||||| | |||||| |||| ||||||  ||| ||| |||||||||| |||||   ||| ||||||| |||| | ||||||  |||| ||||||    
T  10683076 ttgacctacactgagcaagttacattgcatcccagtaacatatatcacatcttcaattatagttatttttccaatcttgccttcaattgcaatttttccc 10683175  T
Q  235 ataccttttccaactagtgttcta 258  Q
    || |||| | |||| || ||||||    
T  10683176 atgccttctgcaaccagggttcta 10683199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 651 - 757
Target Start/End: Original strand, 201185 - 201291
Alignment:
Q  651 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 750  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| |||||||| || | |||||||||||| |  ||||||||||||||||||||| | |    
T  201185 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 201284  T
Q  751 ttctttc 757  Q
    |||||||    
T  201285 ttctttc 201291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 651 - 757
Target Start/End: Original strand, 316022 - 316128
Alignment:
Q  651 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 750  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| |||||||| || | |||||||||||| |  ||||||||||||||||||||| | |    
T  316022 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 316121  T
Q  751 ttctttc 757  Q
    |||||||    
T  316122 ttctttc 316128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 651 - 757
Target Start/End: Original strand, 30409304 - 30409410
Alignment:
Q  651 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 750  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| |||||||| || | |||||||||||| |  ||||||||||||||||||||| | |    
T  30409304 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 30409403  T
Q  751 ttctttc 757  Q
    |||||||    
T  30409404 ttctttc 30409410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 651 - 757
Target Start/End: Original strand, 43810984 - 43811090
Alignment:
Q  651 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 750  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| |||||||| || | |||||||||||| |  ||||||||||||||||||||| | |    
T  43810984 cccttagagtttttcttccctttcttgaagttcttcatatcataatcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 43811083  T
Q  751 ttctttc 757  Q
    |||||||    
T  43811084 ttctttc 43811090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 550
Target Start/End: Original strand, 200563 - 201101
Alignment:
Q  13 tttcatatcagtttgaaatgtcctattctttgcaaggggatttttcagaactaacctttgattcttatcaaaaaatttcaaagagttatccttcattgt- 111  Q
    ||||||||  || ||||| || |||||||||||||| ||| |||||| ||||||||||||||  |||||||| || || || | ||| |||||||| ||     
T  200563 tttcatattggtctgaaaagttctattctttgcaagaggagttttcaaaactaacctttgatgattatcaaacaacttaaaggtgttgtccttcatagta 200662  T
Q  112 tctgaatagcccttttgcataaattgacctacactcaacaagttgcattacatccccataatataaatcacatcttaaattactattaattttccattct 211  Q
     |||| || || || || || || ||||||||||||| ||| ||||| | ||| ||   || ||| |  || |||| ||||| |   | ||| |||||||    
T  200663 actgagtatcctttctgaatgaactgacctacactcagcaaattgcactgcattccaggaacatagagaacttcttcaattattgccactttcccattct 200762  T
Q  212 ttctttcaataacaatctttcccataccttttccaactagtgttctatgatatgcaagcttcaccttgctgtttcttctagtgttgatttctttcaacca 311  Q
    ||| ||||||| |||| || ||||| |||| | |||| |    |||||||| |||||||||||||||  | ||||||| ||  |  | |||| | |||||    
T  200763 ttccttcaatagcaatattccccattccttctgcaaccaagactctatgatctgcaagcttcacctttgtatttcttccaggatccacttctcttaacca 200862  T
Q  312 attcttatttgcagtcatatgattagaacaaccattatctaaaaaccatctatctgacttgcgactttcattattggttgttttcaccattaacaagact 411  Q
      |||| ||| | ||||| ||||||||||||||| ||||||| ||||| || ||||| ||||  || |||||| | |||||| | ||||| |  || | |    
T  200863 tgtcttgtttcctgtcatgtgattagaacaaccagtatctaagaaccaactttctgaattgcagctctcattactagttgttgtaaccatcatgaataat 200962  T
Q  412 gtatcataatctaaatcttcttgtgaaagtatggcttgttcctcttcattctttacttgcttccgtttaccagtccaacattcagaagcataatgaccaa 511  Q
    |  ||| ||||| |||| ||||||| || | ||||||  || || ||||| |||  |||||| | |||||||| ||| |||||||| ||||| || ||||    
T  200963 gattcagaatctgaatcatcttgtgcaattttggcttcctcttcatcattttttgattgctttcctttaccagaccagcattcagaggcatagtgtccaa 201062  T
Q  512 acttttcacaattataacaacatatcttcttcttatcaa 550  Q
    | || ||||| ||  ||||    ||||||||||||||||    
T  201063 atttctcacatttgaaacactgaatcttcttcttatcaa 201101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 550
Target Start/End: Original strand, 315400 - 315938
Alignment:
Q  13 tttcatatcagtttgaaatgtcctattctttgcaaggggatttttcagaactaacctttgattcttatcaaaaaatttcaaagagttatccttcattgt- 111  Q
    ||||||||  || ||||| || |||||||||||||| ||| |||||| ||||||||||||||  |||||||| || || || | ||| |||||||| ||     
T  315400 tttcatattggtctgaaaagttctattctttgcaagaggagttttcaaaactaacctttgatgattatcaaacaacttaaaggtgttgtccttcatagta 315499  T
Q  112 tctgaatagcccttttgcataaattgacctacactcaacaagttgcattacatccccataatataaatcacatcttaaattactattaattttccattct 211  Q
     |||| || || || || || || ||||||||||||| ||| ||||| | ||| ||   || ||| |  || |||| ||||| |   | ||| |||||||    
T  315500 actgagtatcctttctgaatgaactgacctacactcagcaaattgcactgcattccaggaacatagagaacttcttcaattattgccactttcccattct 315599  T
Q  212 ttctttcaataacaatctttcccataccttttccaactagtgttctatgatatgcaagcttcaccttgctgtttcttctagtgttgatttctttcaacca 311  Q
    ||| ||||||| |||| || ||||| |||| | |||| |    |||||||| |||||||||||||||  | ||||||| ||  |  | |||| | |||||    
T  315600 ttccttcaatagcaatattccccattccttctgcaaccaagactctatgatctgcaagcttcacctttgtatttcttccaggatccacttctcttaacca 315699  T
Q  312 attcttatttgcagtcatatgattagaacaaccattatctaaaaaccatctatctgacttgcgactttcattattggttgttttcaccattaacaagact 411  Q
      |||| ||| | ||||| ||||||||||||||| ||||||| ||||| || ||||| ||||  || |||||| | |||||| | ||||| |  || | |    
T  315700 tgtcttgtttcctgtcatgtgattagaacaaccagtatctaagaaccaactttctgaattgcagctctcattactagttgttgtaaccatcatgaataat 315799  T
Q  412 gtatcataatctaaatcttcttgtgaaagtatggcttgttcctcttcattctttacttgcttccgtttaccagtccaacattcagaagcataatgaccaa 511  Q
    |  ||| ||||| |||| ||||||| || | ||||||  || || ||||| |||  |||||| | |||||||| ||| |||||||| ||||| || ||||    
T  315800 gattcagaatctgaatcatcttgtgcaattttggcttcctcttcatcattttttgattgctttcctttaccagaccagcattcagaggcatagtgtccaa 315899  T
Q  512 acttttcacaattataacaacatatcttcttcttatcaa 550  Q
    | || ||||| ||  ||||    ||||||||||||||||    
T  315900 atttctcacatttgaaacactgaatcttcttcttatcaa 315938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 651 - 757
Target Start/End: Complemental strand, 28647567 - 28647461
Alignment:
Q  651 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 750  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| ||||| || || | |||||||||||| |  ||||||||||||||||||||| | |    
T  28647567 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatcttttttgatagtttgaacttgcatggcttgttgaattgatctttcattgc 28647468  T
Q  751 ttctttc 757  Q
    |||||||    
T  28647467 ttctttc 28647461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 323 - 521
Target Start/End: Complemental strand, 28647878 - 28647680
Alignment:
Q  323 cagtcatatgattagaacaaccattatctaaaaaccatctatctgacttgcgactttcattattggttgttttcaccattaacaagactgtatcataatc 422  Q
    ||||||||||||||||||||||| ||||||| ||||| || ||||| |||   || |||||| | |||||| | ||||| |  || | ||  ||| ||||    
T  28647878 cagtcatatgattagaacaaccagtatctaagaaccaactttctgaattgtagctctcattactagttgttgtaaccatcatgaataatgactcaaaatc 28647779  T
Q  423 taaatcttcttgtgaaagtatggcttgttcctcttcattctttacttgcttccgtttaccagtccaacattcagaagcataatgaccaaacttttcaca 521  Q
    | |||| ||||| | || | ||||||  || || |||||||||  |||||| | |||||||| |||||||||||| |||||||| ||||| || |||||    
T  28647778 tgaatcatcttgcgcaattttggcttcctcttcatcattctttgattgctttcctttaccagaccaacattcagaggcataatgtccaaatttctcaca 28647680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 550
Target Start/End: Original strand, 30408682 - 30409220
Alignment:
Q  13 tttcatatcagtttgaaatgtcctattctttgcaaggggatttttcagaactaacctttgattcttatcaaaaaatttcaaagagttatccttcattgt- 111  Q
    ||||||||  || ||||| || |||||||||||||| ||| |||||| ||||||||||||||  |||||||| || || || | ||| |||||||| ||     
T  30408682 tttcatattggtctgaaaagttctattctttgcaagaggagttttcaaaactaacctttgatgattatcaaacaacttaaaggtgttgtccttcatagta 30408781  T
Q  112 tctgaatagcccttttgcataaattgacctacactcaacaagttgcattacatccccataatataaatcacatcttaaattactattaattttccattct 211  Q
     |||| || || || || || || ||||||||||||| ||| ||||| | ||| ||   || ||| |  || |||| ||||| |   | ||| |||||||    
T  30408782 actgagtatcctttctgaatgaactgacctacactcagcaaattgcactgcattccaggaacatagagaacttcttcaattattgccactttcccattct 30408881  T
Q  212 ttctttcaataacaatctttcccataccttttccaactagtgttctatgatatgcaagcttcaccttgctgtttcttctagtgttgatttctttcaacca 311  Q
    ||| ||||||| |||| || ||||| |||| | |||| |    |||||||| |||||||||||||||  | ||||||| ||  |  | |||| | |||||    
T  30408882 ttccttcaatagcaatattccccattccttctgcaaccaagactctatgatctgcaagcttcacctttgtatttcttccaggatccacttctcttaacca 30408981  T
Q  312 attcttatttgcagtcatatgattagaacaaccattatctaaaaaccatctatctgacttgcgactttcattattggttgttttcaccattaacaagact 411  Q
      |||| ||| | ||||| ||||||||||||||| ||||||| ||||| || ||||| ||||  || |||||| | |||||| | ||||| |  || | |    
T  30408982 tgtcttgtttcctgtcatgtgattagaacaaccagtatctaagaaccaactttctgaattgcagctctcattactagttgttgtaaccatcatgaataat 30409081  T
Q  412 gtatcataatctaaatcttcttgtgaaagtatggcttgttcctcttcattctttacttgcttccgtttaccagtccaacattcagaagcataatgaccaa 511  Q
    |  ||| ||||| |||| ||||||| || | ||||||  || || ||||| |||  |||||| | |||||||| ||| |||||||| ||||| || ||||    
T  30409082 gattcagaatctgaatcatcttgtgcaattttggcttcctcttcatcattttttgattgctttcctttaccagaccagcattcagaggcatagtgtccaa 30409181  T
Q  512 acttttcacaattataacaacatatcttcttcttatcaa 550  Q
    | || ||||| ||  ||||    ||||||||||||||||    
T  30409182 atttctcacatttgaaacactgaatcttcttcttatcaa 30409220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 550
Target Start/End: Original strand, 43810362 - 43810900
Alignment:
Q  13 tttcatatcagtttgaaatgtcctattctttgcaaggggatttttcagaactaacctttgattcttatcaaaaaatttcaaagagttatccttcattgt- 111  Q
    ||||||||  || ||||| || |||||||||||||| ||| |||||| ||||||||||||||  |||||||| || || || | ||| |||||||| ||     
T  43810362 tttcatattggtctgaaaagttctattctttgcaagaggagttttcaaaactaacctttgatgattatcaaacaacttaaaggtgttgtccttcatagta 43810461  T
Q  112 tctgaatagcccttttgcataaattgacctacactcaacaagttgcattacatccccataatataaatcacatcttaaattactattaattttccattct 211  Q
     |||| || || || || || || ||||||||||||| ||| ||||| | ||| ||   || ||| |  || |||| ||||| |   | ||| |||||||    
T  43810462 actgagtatcctttctgaatgaactgacctacactcagcaaattgcactgcattccaggaacatagagaacttcttcaattattgccactttcccattct 43810561  T
Q  212 ttctttcaataacaatctttcccataccttttccaactagtgttctatgatatgcaagcttcaccttgctgtttcttctagtgttgatttctttcaacca 311  Q
    ||| ||||||| |||| || ||||| |||| | |||| |    |||||||| |||||||||||||||  | ||||||| ||  |  | |||| | |||||    
T  43810562 ttccttcaatagcaatattccccattccttctgcaaccaagactctatgatctgcaagcttcacctttgtatttcttccaggatccacttctcttaacca 43810661  T
Q  312 attcttatttgcagtcatatgattagaacaaccattatctaaaaaccatctatctgacttgcgactttcattattggttgttttcaccattaacaagact 411  Q
      |||| ||| | ||||| ||||||||||||||| ||||||| ||||| || ||||| ||||  || |||||| | |||||| | ||||| |  || | |    
T  43810662 tgtcttgtttcctgtcatgtgattagaacaaccagtatctaagaaccaactttctgaattgcagctctcattactagttgttgtaaccatcatgaataat 43810761  T
Q  412 gtatcataatctaaatcttcttgtgaaagtatggcttgttcctcttcattctttacttgcttccgtttaccagtccaacattcagaagcataatgaccaa 511  Q
    |  ||| ||||| |||| ||||||| || | ||||||  || || ||||| |||  |||||| | |||||||| ||| |||||||| ||||| || ||||    
T  43810762 gattcagaatctgaatcatcttgtgcaattttggcttcctcttcatcattttttgattgctttcctttaccagaccagcattcagaggcatagtgtccaa 43810861  T
Q  512 acttttcacaattataacaacatatcttcttcttatcaa 550  Q
    | || ||||| ||  ||||    ||||||||||||||||    
T  43810862 atttctcacatttgaaacactgaatcttcttcttatcaa 43810900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 651 - 757
Target Start/End: Complemental strand, 41946472 - 41946366
Alignment:
Q  651 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 750  Q
    |||||||||||  | || |||||||| || ||||   ||||| | ||||||||||| | |||||||||||| |  ||||||||||||||||||||| | |    
T  41946472 cccttagagtttttcttccctttcttaaagttctccctatcacaatcatccttcttgatagtttgaacttgcagggcttgttgaattgatctttcaatgc 41946373  T
Q  751 ttctttc 757  Q
    |||||||    
T  41946372 ttctttc 41946366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 2e-26; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 664 - 833
Target Start/End: Complemental strand, 27187282 - 27187113
Alignment:
Q  664 ttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttcagacat 763  Q
    |||| ||||||||||| |||||  ||||||  ||||||||||| | ||||||||||||||  |||| |||||||||||||||||| ||||||||||  |     
T  27187282 ttttccctttcttgaagttcttcctatcattatcatccttcttgatagtttgaacttgtagggctttttgaattgatctttcactgcttctttcagttac 27187183  T
Q  764 tattaattcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatcctttgcttct 833  Q
     || |||||| |||| ||||| |||||||||| ||| ||||| ||||| || | ||||||||||| ||||    
T  27187182 catcaattcatgtgcttccaatgaactctgcaattcctcaatcttcaatgtcttcacatcctttgattct 27187113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 646 - 828
Target Start/End: Complemental strand, 31355840 - 31355658
Alignment:
Q  646 tttcgcccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttc 745  Q
    |||| |||||||||||  | || | ||||||||| |||||  ||||||  |||| |||||| | ||||||||||||||  ||||||||||||||||||||    
T  31355840 tttcccccttagagtttttcttccttttcttgaagttcttcctatcattatcatacttcttgatagtttgaacttgtagggcttgttgaattgatctttc 31355741  T
Q  746 actacttctttcagacattattaattcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatcctttg 828  Q
    ||| ||| ||||||  |  || |||||| |||| ||||| |||||||||| ||||||||| ||||| || | |||||||||||    
T  31355740 acttcttgtttcagttaccatcaattcatgtgcttccaatgaactctgcaattcttcaatcttcaatgtcttcacatcctttg 31355658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 651 - 759
Target Start/End: Original strand, 43682681 - 43682789
Alignment:
Q  651 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 750  Q
    |||||||||||  | || |||||||| || |||||  ||||||  ||||||||||| | ||||||||||||||  ||||||||||||||||||||||| |    
T  43682681 cccttagagtttttcttccctttctttaagttcttcctatcattatcatccttcttgatagtttgaacttgtagggcttgttgaattgatctttcactgc 43682780  T
Q  751 ttctttcag 759  Q
    |||||||||    
T  43682781 ttctttcag 43682789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 651 - 757
Target Start/End: Complemental strand, 44148214 - 44148108
Alignment:
Q  651 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 750  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| |||||||| || | |||||||||||| |  ||||||||||||||||||||| | |    
T  44148214 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 44148115  T
Q  751 ttctttc 757  Q
    |||||||    
T  44148114 ttctttc 44148108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 550
Target Start/End: Complemental strand, 44148836 - 44148298
Alignment:
Q  13 tttcatatcagtttgaaatgtcctattctttgcaaggggatttttcagaactaacctttgattcttatcaaaaaatttcaaagagttatccttcattgt- 111  Q
    ||||||||  || ||||| || |||||||||||||| ||| |||||| ||||||||||||||  |||||||| || || || | ||| |||||||| ||     
T  44148836 tttcatattggtctgaaaagttctattctttgcaagaggagttttcaaaactaacctttgatgattatcaaacaacttaaaggtgttgtccttcatagta 44148737  T
Q  112 tctgaatagcccttttgcataaattgacctacactcaacaagttgcattacatccccataatataaatcacatcttaaattactattaattttccattct 211  Q
     |||| || || || || || || ||||||||||||| ||| ||||| | ||| ||   || ||| |  || |||| ||||| |   | ||| |||||||    
T  44148736 actgagtatcctttctgaatgaactgacctacactcagcaaattgcactgcattccaggaacatagagaacttcttcaattattgccactttcccattct 44148637  T
Q  212 ttctttcaataacaatctttcccataccttttccaactagtgttctatgatatgcaagcttcaccttgctgtttcttctagtgttgatttctttcaacca 311  Q
    ||| ||||||| |||| || ||||| |||| | |||| |    |||||||| |||||||||||||||  | ||||||| ||  |  | |||| | |||||    
T  44148636 ttccttcaatagcaatattccccattccttctgcaaccaagactctatgatctgcaagcttcacctttgtatttcttccaggatccacttctcttaacca 44148537  T
Q  312 attcttatttgcagtcatatgattagaacaaccattatctaaaaaccatctatctgacttgcgactttcattattggttgttttcaccattaacaagact 411  Q
      |||| ||| | ||||| ||||||||||||||| ||||||| ||||| || ||||| ||||  || |||||| | |||||| | ||||| |  || | |    
T  44148536 tgtcttgtttcctgtcatgtgattagaacaaccagtatctaagaaccaactttctgaattgcagctctcattactagttgttgtaaccatcatgaataat 44148437  T
Q  412 gtatcataatctaaatcttcttgtgaaagtatggcttgttcctcttcattctttacttgcttccgtttaccagtccaacattcagaagcataatgaccaa 511  Q
    |  ||| ||||| |||| ||||||| || | ||||||  || || ||||| |||  |||||| | |||||||| ||| |||||||| ||||| || ||||    
T  44148436 gattcagaatctgaatcatcttgtgcaattttggcttcctcttcatcattttttgattgctttcctttaccagaccagcattcagaggcatagtgtccaa 44148337  T
Q  512 acttttcacaattataacaacatatcttcttcttatcaa 550  Q
    | || ||||| ||  ||||    ||||||||||||||||    
T  44148336 atttctcacatttgaaacactgaatcttcttcttatcaa 44148298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 786 - 831
Target Start/End: Complemental strand, 25171159 - 25171114
Alignment:
Q  786 gaactctgcatttcttcaattttcaaagtttgcacatcctttgctt 831  Q
    |||||||||| ||||||||| |||| ||||| ||||||||||||||    
T  25171159 gaactctgcaattcttcaatcttcatagttttcacatcctttgctt 25171114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 2e-23; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 316 - 564
Target Start/End: Complemental strand, 23255018 - 23254770
Alignment:
Q  316 ttatttgcagtcatatgattagaacaaccattatctaaaaaccatctatctgacttgcgactttcattattggttgttttcaccattaacaagactgtat 415  Q
    |||||| || |||||||||||||||||| | ||||||| |||||||| ||||| |||| ||| |||||| | |||||| | ||||| || || | ||| |    
T  23255018 ttatttccaatcatatgattagaacaactagtatctaacaaccatctttctgaattgcaactctcattactagttgttgtaaccatgaataacattgtgt 23254919  T
Q  416 cataatctaaatcttcttgtgaaagtatggcttgttcctcttcattctttacttgcttccgtttaccagtccaacattcagaagcataatgaccaaactt 515  Q
    || ||||| ||||||||||   ||   | ||||||| |||| |||||||| ||||||| | ||||| || ||  ||||||||| || | |||||||||||    
T  23254918 cagaatctgaatcttcttgaacaatcttagcttgttgctctacattctttgcttgctttcctttactagacccgcattcagaaacaaagtgaccaaactt 23254819  T
Q  516 ttcacaattataacaacatatcttcttcttatcaaagcctttcttcttg 564  Q
     ||||| ||| | ||    ||||||||||||||||| ||||||||||||    
T  23254818 ctcacatttaaagcactgaatcttcttcttatcaaaacctttcttcttg 23254770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 13 - 368
Target Start/End: Original strand, 17889509 - 17889865
Alignment:
Q  13 tttcatatcagtttgaaatgtcctattctttgcaaggggatttttcagaactaacctttgattcttatcaaaaaatttcaaagagttatccttcattgt- 111  Q
    ||||||||  || ||||| || |||||||||||||| ||| |||||| ||||||||||||||  |||||||| || || || | ||| |||||||| ||     
T  17889509 tttcatattggtctgaaaagttctattctttgcaagaggagttttcaaaactaacctttgatgattatcaaacaacttaaaggtgttttccttcatagta 17889608  T
Q  112 tctgaatagcccttttgcataaattgacctacactcaacaagttgcattacatccccataatataaatcacatcttaaattactattaattttccattct 211  Q
     |||| || || || || || |||||||||||||||| ||||||||| | ||| ||   || ||| |  || |||||||||| |   | ||| |||||||    
T  17889609 actgagtatcctttctgaatgaattgacctacactcagcaagttgcactgcattccaggaacatagagaacttcttaaattattgccactttcccattct 17889708  T
Q  212 ttctttcaataacaatctttcccataccttttccaactagtgttctatgatatgcaagcttcaccttgctgtttcttctagtgttgatttctttcaacca 311  Q
    ||| ||||||| |||| || ||||| |||| | ||||||    |||||||| |||| ||||||||||  ||||||||| ||  |  | |||| | |||||    
T  17889709 ttccttcaatagcaatattccccattccttctgcaactaagaatctatgatttgcacgcttcacctttgtgtttcttccaggatacacttctcttaacca 17889808  T
Q  312 attcttatttgcagtcatatgattagaacaaccattatctaaaaaccatctatctga 368  Q
      ||||  || || |||||||||||||||||||| ||||||| ||||| || |||||    
T  17889809 tgtcttgattccaatcatatgattagaacaaccagtatctaagaaccaactttctga 17889865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 651 - 757
Target Start/End: Original strand, 8319005 - 8319111
Alignment:
Q  651 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 750  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| ||||||||||| | |||||||||||| |  ||||||||||||||||||||| | |    
T  8319005 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatccttcttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 8319104  T
Q  751 ttctttc 757  Q
    |||||||    
T  8319105 ttctttc 8319111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 651 - 757
Target Start/End: Original strand, 17880980 - 17881086
Alignment:
Q  651 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 750  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| ||||||||||| | |||||||||||| |  ||||||||||||||||||||| | |    
T  17880980 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatccttcttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 17881079  T
Q  751 ttctttc 757  Q
    |||||||    
T  17881080 ttctttc 17881086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 651 - 757
Target Start/End: Original strand, 27571233 - 27571339
Alignment:
Q  651 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 750  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| ||||||||||| | |||||||||||| |  ||||||||||||||||||||| | |    
T  27571233 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatccttcttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 27571332  T
Q  751 ttctttc 757  Q
    |||||||    
T  27571333 ttctttc 27571339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 13 - 105
Target Start/End: Complemental strand, 23255322 - 23255230
Alignment:
Q  13 tttcatatcagtttgaaatgtcctattctttgcaaggggatttttcagaactaacctttgattcttatcaaaaaatttcaaagagttatcctt 105  Q
    ||||||||||||||||||  |  ||||||||||||||||| ||||||  ||||||| ||||||||||||||| | |||||  |||||||||||    
T  23255322 tttcatatcagtttgaaagtttatattctttgcaaggggagttttcaacactaaccattgattcttatcaaacagtttcagggagttatcctt 23255230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 13 - 550
Target Start/End: Original strand, 8318383 - 8318921
Alignment:
Q  13 tttcatatcagtttgaaatgtcctattctttgcaaggggatttttcagaactaacctttgattcttatcaaaaaatttcaaagagttatccttcattgtt 112  Q
    ||||||||  || ||||| || |||||||||||||| ||| |||||| ||||||||||||||  |||||||| || || || | ||| |||||||| ||     
T  8318383 tttcatattggtctgaaaagttctattctttgcaagaggagttttcaaaactaacctttgatgattatcaaacaacttaaaggtgttgtccttcatagta 8318482  T
Q  113 -ctgaatagcccttttgcataaattgacctacactcaacaagttgcattacatccccataatataaatcacatcttaaattactattaattttccattct 211  Q
     |||| || || || || || || ||||||||||||| ||| ||||| | ||| ||   || ||| |  || |||| ||||| |   | ||| |||||||    
T  8318483 actgagtatcctttctgaatgaactgacctacactcagcaaattgcactgcattccaggaacatagagaacttcttcaattattgccactttcccattct 8318582  T
Q  212 ttctttcaataacaatctttcccataccttttccaactagtgttctatgatatgcaagcttcaccttgctgtttcttctagtgttgatttctttcaacca 311  Q
    ||| ||||||| |||| || ||||| |||| | |||| |    |||||||| |||||||||||||||  | ||||||| ||  |  | |||| | |||||    
T  8318583 ttccttcaatagcaatattccccattccttctgcaaccaagactctatgatctgcaagcttcacctttgtatttcttccaggatccacttctcttaacca 8318682  T
Q  312 attcttatttgcagtcatatgattagaacaaccattatctaaaaaccatctatctgacttgcgactttcattattggttgttttcaccattaacaagact 411  Q
      |||| ||| | ||||| ||||||||||||||| ||||||| ||||| || ||||| ||||  || |||||| | |||||| | ||||| |  || | |    
T  8318683 tgtcttgtttcctgtcatgtgattagaacaaccagtatctaagaaccaactttctgaattgcagctctcattactagttgttgtaaccatcatgaataat 8318782  T
Q  412 gtatcataatctaaatcttcttgtgaaagtatggcttgttcctcttcattctttacttgcttccgtttaccagtccaacattcagaagcataatgaccaa 511  Q
    |  ||| ||||| |||| ||||||| || | ||||||  || || ||||| |||  |||||| | |||||||| |||||||||||| ||||| || ||||    
T  8318783 gattcagaatctgaatcatcttgtgcaattttggcttcctcttcatcattttttgattgctttcctttaccagaccaacattcagaggcatagtgtccaa 8318882  T
Q  512 acttttcacaattataacaacatatcttcttcttatcaa 550  Q
    | || ||||| ||  ||||    ||||||||||||||||    
T  8318883 atttctcacatttgaaacactgaatcttcttcttatcaa 8318921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 655 - 757
Target Start/End: Complemental strand, 17160745 - 17160643
Alignment:
Q  655 tagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttct 754  Q
    |||||||| | || |||||||||||  | ||  ||||||| ||||||||||| | |||||||||||  || ||||||||||||||||||||||| |||||    
T  17160745 tagagttattcttccctttcttgaatattttcctatcataatcatccttcttgatagtttgaactttcaaggcttgttgaattgatctttcactgcttct 17160646  T
Q  755 ttc 757  Q
    |||    
T  17160645 ttc 17160643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 651 - 828
Target Start/End: Original strand, 21414100 - 21414277
Alignment:
Q  651 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 750  Q
    |||||||||||  | || ||||||||||| |||||  ||||||  |||||||||||   ||||||||||||||  ||||||||| ||||| |||||||      
T  21414100 cccttagagtttttcttccctttcttgaagttcttcctatcattatcatccttcttggtagtttgaacttgtagggcttgttgagttgatttttcactgt 21414199  T
Q  751 ttctttcagacattattaattcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatcctttg 828  Q
    |||||||||  |  || |||||| |||| || || ||||||| || ||| ||||| ||||| || | |||||||||||    
T  21414200 ttctttcagttaccatcaattcatgtgcttctaatgaactcttcaattcctcaatcttcaatgtcttcacatcctttg 21414277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 675 - 748
Target Start/End: Complemental strand, 23254684 - 23254611
Alignment:
Q  675 ttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcact 748  Q
    ||||| |||||| ||||| | ||||| ||||||| |||||||||||| || |||||||||||||||||||||||    
T  23254684 ttgaagttctttctatcaaaatcatctttcttcatagtttgaacttgcaaggcttgttgaattgatctttcact 23254611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 205 - 550
Target Start/End: Original strand, 27570804 - 27571149
Alignment:
Q  205 ccattctttctttcaataacaatctttcccataccttttccaactagtgttctatgatatgcaagcttcaccttgctgtttcttctagtgttgatttctt 304  Q
    |||||||||| ||||||| |||| || ||||| |||| | ||||||    ||||| || |||||| ||||||||  ||||||||| ||  |  | ||||     
T  27570804 ccattctttccttcaatagcaatattccccattccttctgcaactaagactctattatctgcaagtttcacctttgtgtttcttccagaatccacttctc 27570903  T
Q  305 tcaaccaattcttatttgcagtcatatgattagaacaaccattatctaaaaaccatctatctgacttgcgactttcattattggttgttttcaccattaa 404  Q
    | |||||  ||||  || ||||||||||||||||||||||| ||||||| ||||| || | ||| ||||  || |||||| | |||||| | ||||| |     
T  27570904 ttaaccatgtcttggttccagtcatatgattagaacaaccagtatctaagaaccaactttttgaattgcagctctcattactagttgttgtaaccatcat 27571003  T
Q  405 caagactgtatcataatctaaatcttcttgtgaaagtatggcttgttcctcttcattctttacttgcttccgtttaccagtccaacattcagaagcataa 504  Q
     || | ||  ||| ||||| |||| ||||| | || | ||||||  || || |||||||||  |||||| | |||||||| |||||||||||| ||||||    
T  27571004 gaataatgactcagaatctgaatcatcttgagcaattttggcttcctcttcatcattctttgattgctttcctttaccagaccaacattcagatgcataa 27571103  T
Q  505 tgaccaaacttttcacaattataacaacatatcttcttcttatcaa 550  Q
    || ||||| || ||||| ||  ||||    ||||||||||||||||    
T  27571104 tgtccaaatttctcacatttgaaacactgaatcttcttcttatcaa 27571149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 1e-21; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 671 - 828
Target Start/End: Original strand, 13270049 - 13270206
Alignment:
Q  671 tttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttcagacattattaat 770  Q
    ||||||||| || ||  ||||||  ||||||||||| | ||||||||||||||  ||||||||||||||||||||||| ||||||||||  |  || |||    
T  13270049 tttcttgaagttattcctatcattatcatccttcttgatagtttgaacttgtagggcttgttgaattgatctttcactgcttctttcagttaccatcaat 13270148  T
Q  771 tcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatcctttg 828  Q
    ||| |||| || || |||||||||| ||||||||| ||||| || | |||||| ||||    
T  13270149 tcatgtgcttctaatgaactctgcaattcttcaatcttcaatgtcttcacatcttttg 13270206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 663 - 747
Target Start/End: Complemental strand, 42515469 - 42515385
Alignment:
Q  663 cttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcac 747  Q
    ||||| ||||||||||| |||||  ||||||  ||||||||||| | ||||||||||||||  ||||||||||||||||||||||    
T  42515469 ctttttcctttcttgaagttcttcctatcattatcatccttcttgatagtttgaacttgtagggcttgttgaattgatctttcac 42515385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 651 - 757
Target Start/End: Complemental strand, 8052048 - 8051942
Alignment:
Q  651 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 750  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| |||||||| || | |||||||||||| |  ||||||||||||||||||||| | |    
T  8052048 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 8051949  T
Q  751 ttctttc 757  Q
    |||||||    
T  8051948 ttctttc 8051942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 651 - 757
Target Start/End: Complemental strand, 36671707 - 36671601
Alignment:
Q  651 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 750  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| |||||||| || | |||||||||||| |  ||||||||||||||||||||| | |    
T  36671707 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 36671608  T
Q  751 ttctttc 757  Q
    |||||||    
T  36671607 ttctttc 36671601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 669 - 826
Target Start/End: Complemental strand, 17256418 - 17256261
Alignment:
Q  669 cctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttcagacattatta 768  Q
    ||||||||||| |||||  ||||||| ||||||||  | | |||||||||||| ||| ||||||||||||||||||||   ||||| ||||| |  || |    
T  17256418 cctttcttgaagttcttcctatcataatcatcctttctgatagtttgaacttgcaaaacttgttgaattgatctttcatcgcttctctcagaaaccatca 17256319  T
Q  769 attcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatcctt 826  Q
    ||||| | || ||||  ||||| |||| |||| |||| ||||| |||| |||||||||    
T  17256318 attcatgagcttccagtgaactttgcaattctacaatcttcaaggttttcacatcctt 17256261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 550
Target Start/End: Complemental strand, 8052670 - 8052132
Alignment:
Q  13 tttcatatcagtttgaaatgtcctattctttgcaaggggatttttcagaactaacctttgattcttatcaaaaaatttcaaagagttatccttcattgt- 111  Q
    ||||||||  || ||||| || |||||||||||||| ||| |||||| ||||||||||||||  |||||||| || || || | ||| |||||||| ||     
T  8052670 tttcatattggtctgaaaagttctattctttgcaagaggagttttcaaaactaacctttgatgattatcaaacaacttaaaggtgttgtccttcatagta 8052571  T
Q  112 tctgaatagcccttttgcataaattgacctacactcaacaagttgcattacatccccataatataaatcacatcttaaattactattaattttccattct 211  Q
     |||| || || || || || || ||||||||||||| ||| ||||| | ||| ||   || ||| |  || |||| ||||| |   | ||| |||||||    
T  8052570 actgagtatcctttctgaatgaactgacctacactcagcaaattgcactgcattccaggaacatagagaacttcttcaattattgccactttcccattct 8052471  T
Q  212 ttctttcaataacaatctttcccataccttttccaactagtgttctatgatatgcaagcttcaccttgctgtttcttctagtgttgatttctttcaacca 311  Q
    ||| ||||||| |||| || ||||| |||| | |||| |    |||||||| |||||||||||||||  | ||||||| ||  |  | |||| | |||||    
T  8052470 ttccttcaatagcaatattccccattccttctgcaaccaagactctatgatctgcaagcttcacctttgtatttcttccaggatccacttctcttaacca 8052371  T
Q  312 attcttatttgcagtcatatgattagaacaaccattatctaaaaaccatctatctgacttgcgactttcattattggttgttttcaccattaacaagact 411  Q
      |||| ||| | ||||| ||||||||||||||| ||||||| ||||| || ||||| ||||  || |||||| | |||||| | ||||| |  || | |    
T  8052370 tgtcttgtttcctgtcatgtgattagaacaaccagtatctaagaaccaactttctgaattgcagctctcattactagttgttgtaaccatcatgaataat 8052271  T
Q  412 gtatcataatctaaatcttcttgtgaaagtatggcttgttcctcttcattctttacttgcttccgtttaccagtccaacattcagaagcataatgaccaa 511  Q
    |  ||| ||||| |||| ||||||| || | ||||||  || || ||||| |||  |||||| | |||||||| ||| |||||||| ||||| || ||||    
T  8052270 gattcagaatctgaatcatcttgtgcaattttggcttcctcttcatcattttttgattgctttcctttaccagaccagcattcagaggcatagtgtccaa 8052171  T
Q  512 acttttcacaattataacaacatatcttcttcttatcaa 550  Q
    | || ||||| ||  ||||    ||||||||||||||||    
T  8052170 atttctcacatttgaaacactgaatcttcttcttatcaa 8052132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 550
Target Start/End: Complemental strand, 36672329 - 36671791
Alignment:
Q  13 tttcatatcagtttgaaatgtcctattctttgcaaggggatttttcagaactaacctttgattcttatcaaaaaatttcaaagagttatccttcattgt- 111  Q
    ||||||||  || ||||| || |||||||||||||| ||| |||||| ||||||||||||||  |||||||| || || || | ||| |||||||| ||     
T  36672329 tttcatattggtctgaaaagttctattctttgcaagaggagttttcaaaactaacctttgatgattatcaaacaacttaaaggtgttgtccttcatagta 36672230  T
Q  112 tctgaatagcccttttgcataaattgacctacactcaacaagttgcattacatccccataatataaatcacatcttaaattactattaattttccattct 211  Q
     |||| || || || || || || ||||||||||||| ||| ||||| | ||| ||   || ||| |  || |||| ||||| |   | ||| |||||||    
T  36672229 actgagtatcctttctgaatgaactgacctacactcagcaaattgcactgcattccaggaacatagagaacttcttcaattattgccactttcccattct 36672130  T
Q  212 ttctttcaataacaatctttcccataccttttccaactagtgttctatgatatgcaagcttcaccttgctgtttcttctagtgttgatttctttcaacca 311  Q
    ||| ||||||| |||| || ||||| |||| | |||| |    |||||||| |||||||||||||||  | ||||||| ||  |  | |||| | |||||    
T  36672129 ttccttcaatagcaatattccccattccttctgcaaccaagactctatgatctgcaagcttcacctttgtatttcttccaggatccacttctcttaacca 36672030  T
Q  312 attcttatttgcagtcatatgattagaacaaccattatctaaaaaccatctatctgacttgcgactttcattattggttgttttcaccattaacaagact 411  Q
      |||| ||| | ||||| ||||||||||||||| ||||||| ||||| || ||||| ||||  || |||||| | |||||| | ||||| |  || | |    
T  36672029 tgtcttgtttcctgtcatgtgattagaacaaccagtatctaagaaccaactttctgaattgcagctctcattactagttgttgtaaccatcatgaataat 36671930  T
Q  412 gtatcataatctaaatcttcttgtgaaagtatggcttgttcctcttcattctttacttgcttccgtttaccagtccaacattcagaagcataatgaccaa 511  Q
    |  ||| ||||| |||| ||||||| || | ||||||  || || ||||| |||  |||||| | |||||||| ||| |||||||| ||||| || ||||    
T  36671929 gattcagaatctgaatcatcttgtgcaattttggcttcctcttcatcattttttgattgctttcctttaccagaccagcattcagaggcatagtgtccaa 36671830  T
Q  512 acttttcacaattataacaacatatcttcttcttatcaa 550  Q
    | || ||||| ||  ||||    ||||||||||||||||    
T  36671829 atttctcacatttgaaacactgaatcttcttcttatcaa 36671791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 51; Significance: 9e-20; HSPs: 2)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 651 - 757
Target Start/End: Original strand, 48366 - 48472
Alignment:
Q  651 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 750  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| ||||||||||| | |||||||||||| || ||||||||||||||||||||| | |    
T  48366 cccttagagtttttctttcctttcttgaagttcttcctatcataatcatccttcttgatagtttgaacttgcaaggcttgttgaattgatctttcattgc 48465  T
Q  751 ttctttc 757  Q
    |||||||    
T  48466 ttctttc 48472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 13 - 550
Target Start/End: Original strand, 47744 - 48282
Alignment:
Q  13 tttcatatcagtttgaaatgtcctattctttgcaaggggatttttcagaactaacctttgattcttatcaaaaaatttcaaagagttatccttcattgtt 112  Q
    ||||||||  || ||||| || |||||||||||||| ||| |||||| ||||||||||||||  |||||||| || || || | ||| |||||||| ||     
T  47744 tttcatattggtctgaaaagttctattctttgcaagaggagttttcaaaactaacctttgatgattatcaaacaacttaaaggtgttgtccttcatagta 47843  T
Q  113 -ctgaatagcccttttgcataaattgacctacactcaacaagttgcattacatccccataatataaatcacatcttaaattactattaattttccattct 211  Q
     |||| || || || || || || ||||||||||||| ||| ||||| | ||| ||   || ||| |  || |||| ||||| |   | ||| |||||||    
T  47844 actgagtatcctttctgaatgaactgacctacactcagcaaattgcactgcattccaggaacatagagaacttcttcaattattgccactttcccattct 47943  T
Q  212 ttctttcaataacaatctttcccataccttttccaactagtgttctatgatatgcaagcttcaccttgctgtttcttctagtgttgatttctttcaacca 311  Q
    ||| ||||||| |||| || ||||| |||| | |||| |    |||||||| |||||||||||||||  | ||||||| ||  |  | |||| | |||||    
T  47944 ttccttcaatagcaatattccccattccttctgcaaccaagactctatgatctgcaagcttcacctttgtatttcttccaggatccacttctcttaacca 48043  T
Q  312 attcttatttgcagtcatatgattagaacaaccattatctaaaaaccatctatctgacttgcgactttcattattggttgttttcaccattaacaagact 411  Q
      |||| ||| | ||||| ||||||||||||||| ||||||| ||||| || ||||| ||||  || |||||| | |||||| | ||||| |  || | |    
T  48044 tgtcttgtttcctgtcatgtgattagaacaaccagtatctaagaaccaactttctgaattgcagctctcattactagttgttgtaaccatcatgaataat 48143  T
Q  412 gtatcataatctaaatcttcttgtgaaagtatggcttgttcctcttcattctttacttgcttccgtttaccagtccaacattcagaagcataatgaccaa 511  Q
    |  ||| ||||| |||| ||||||| || | ||||||  || || ||||| |||  |||||| | |||||||| |||||||||||| ||||| || ||||    
T  48144 gattcagaatctgaatcatcttgtgcaattttggcttcctcttcatcattttttgattgctttcctttaccagaccaacattcagaggcatagtgtccaa 48243  T
Q  512 acttttcacaattataacaacatatcttcttcttatcaa 550  Q
    | || ||||| ||  ||||    ||||||||||||||||    
T  48244 atttctcacatttgaaacactgaatcttcttcttatcaa 48282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 2e-17; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 651 - 757
Target Start/End: Complemental strand, 27758053 - 27757947
Alignment:
Q  651 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 750  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| ||||||||||| | |||||||||||| |  ||||||||||||||||||||| | |    
T  27758053 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatccttcttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 27757954  T
Q  751 ttctttc 757  Q
    |||||||    
T  27757953 ttctttc 27757947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 651 - 757
Target Start/End: Original strand, 7943584 - 7943690
Alignment:
Q  651 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 750  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| |||||||| || | |||||||||||| |  ||||||||||||||||||||| | |    
T  7943584 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 7943683  T
Q  751 ttctttc 757  Q
    |||||||    
T  7943684 ttctttc 7943690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 550
Target Start/End: Original strand, 7942962 - 7943500
Alignment:
Q  13 tttcatatcagtttgaaatgtcctattctttgcaaggggatttttcagaactaacctttgattcttatcaaaaaatttcaaagagttatccttcattgt- 111  Q
    ||||||||  || ||||| || |||||||||||||| ||| |||||| ||||||||||||||  |||||||| || || || | ||| |||||||| ||     
T  7942962 tttcatattggtctgaaaagttctattctttgcaagaggagttttcaaaactaacctttgatgattatcaaacaacttaaaggtgttgtccttcatagta 7943061  T
Q  112 tctgaatagcccttttgcataaattgacctacactcaacaagttgcattacatccccataatataaatcacatcttaaattactattaattttccattct 211  Q
     |||| || || || || || || ||||||||||||| ||| ||||| | ||| ||   || ||| |  || |||| ||||| |   | ||| |||||||    
T  7943062 actgagtatcctttctgaatgaactgacctacactcagcaaattgcactgcattccaggaacatagagaacttcttcaattattgccactttcccattct 7943161  T
Q  212 ttctttcaataacaatctttcccataccttttccaactagtgttctatgatatgcaagcttcaccttgctgtttcttctagtgttgatttctttcaacca 311  Q
    ||| ||||||| |||| || ||||| |||| | |||| |    |||||||| |||||||||||||||  | ||||||| ||  |  | |||| | |||||    
T  7943162 ttccttcaatagcaatattccccattccttatgcaaccaagactctatgatctgcaagcttcacctttgtatttcttccaggatccacttctcttaacca 7943261  T
Q  312 attcttatttgcagtcatatgattagaacaaccattatctaaaaaccatctatctgacttgcgactttcattattggttgttttcaccattaacaagact 411  Q
      |||| ||| | ||||| ||||||||||||||| ||||||| ||||| || ||||| ||||  || |||||| | |||||| | ||||| |  || | |    
T  7943262 tgtcttgtttcctgtcatgtgattagaacaaccagtatctaagaaccaactttctgaattgcagctctcattactagttgttgtaaccatcatgaataat 7943361  T
Q  412 gtatcataatctaaatcttcttgtgaaagtatggcttgttcctcttcattctttacttgcttccgtttaccagtccaacattcagaagcataatgaccaa 511  Q
    |  ||| ||||| |||| ||||||| || | ||||||  || || ||||| |||  |||||| | |||||||| ||| |||||||| ||||| || ||||    
T  7943362 gattcagaatctgaatcatcttgtgcaattttggcttcctcttcatcattttttgattgctttcctttaccagaccagcattcagaggcatagtgtccaa 7943461  T
Q  512 acttttcacaattataacaacatatcttcttcttatcaa 550  Q
    | || ||||| ||  ||||    ||||||||||||||||    
T  7943462 atttctcacatttgaaacactgaatcttcttcttatcaa 7943500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 550
Target Start/End: Complemental strand, 27758675 - 27758137
Alignment:
Q  13 tttcatatcagtttgaaatgtcctattctttgcaaggggatttttcagaactaacctttgattcttatcaaaaaatttcaaagagttatccttcattgt- 111  Q
    ||||||||  || ||||| || |||||||||||||| ||| |||||| ||||||||||||||  |||||||| || || || | ||| |||||||| ||     
T  27758675 tttcatattggtctgaaaggttctattctttgcaagaggagttttcaaaactaacctttgatgattatcaaacaacttaaaggtgttgtccttcatagta 27758576  T
Q  112 tctgaatagcccttttgcataaattgacctacactcaacaagttgcattacatccccataatataaatcacatcttaaattactattaattttccattct 211  Q
     |||| || || || || || || ||||||||||||| ||| ||||| | ||| ||   || ||| |  || |||| ||||| |   | ||| |||||||    
T  27758575 actgagtatcctttctgaatgaactgacctacactcagcaaattgcactgcattccaggaacatagagaacttcttcaattattgccactttcccattct 27758476  T
Q  212 ttctttcaataacaatctttcccataccttttccaactagtgttctatgatatgcaagcttcaccttgctgtttcttctagtgttgatttctttcaacca 311  Q
    ||| ||||||| |||| || ||||| |||| | ||| ||    |||||||| |||||| ||||||||  | ||||||| ||  |  | |||| | |||||    
T  27758475 ttccttcaatagcaatattccccattccttctgcaattaagactctatgatctgcaagtttcacctttgtatttcttccaggatccacttctcttaacca 27758376  T
Q  312 attcttatttgcagtcatatgattagaacaaccattatctaaaaaccatctatctgacttgcgactttcattattggttgttttcaccattaacaagact 411  Q
      |||||||| | ||||| ||||||||||||||| ||||||| ||||| || ||||| ||||  || |||||| | |||||| | ||||| |  || | |    
T  27758375 tgtcttatttcctgtcatgtgattagaacaaccagtatctaagaaccaactttctgaattgcagctctcattactagttgttgtaaccatcatgaataat 27758276  T
Q  412 gtatcataatctaaatcttcttgtgaaagtatggcttgttcctcttcattctttacttgcttccgtttaccagtccaacattcagaagcataatgaccaa 511  Q
    |  ||| ||||| |||| ||||||| || | ||||||  || || ||||| |||  |||||| | | |||||| |||||||||||| ||||| || ||||    
T  27758275 gattcagaatctgaatcatcttgtgcaattttggcttcctcttcatcattttttgattgctttcctataccagaccaacattcagaggcatagtgtccaa 27758176  T
Q  512 acttttcacaattataacaacatatcttcttcttatcaa 550  Q
    | || ||||| ||  ||||    ||||||||||||||||    
T  27758175 atttctcacatttgaaacactgaatcttcttcttatcaa 27758137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 651 - 757
Target Start/End: Complemental strand, 26312669 - 26312563
Alignment:
Q  651 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 750  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| |||||||| || | |||||||||||| |  ||||||||||||||||||||| | |    
T  26312669 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 26312570  T
Q  751 ttctttc 757  Q
    |||||||    
T  26312569 ttctttc 26312563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 13 - 550
Target Start/End: Complemental strand, 26313291 - 26312753
Alignment:
Q  13 tttcatatcagtttgaaatgtcctattctttgcaaggggatttttcagaactaacctttgattcttatcaaaaaatttcaaagagttatccttcattgtt 112  Q
    ||||||||  || ||||| || |||||||||||||| ||| |||||| ||||||||||||||  |||||||| || || || | ||| |||||||| ||     
T  26313291 tttcatattggtctgaaaagttctattctttgcaagaggagttttcaaaactaacctttgatgattatcaaacaacttaaaggtgttgtccttcatagta 26313192  T
Q  113 -ctgaatagcccttttgcataaattgacctacactcaacaagttgcattacatccccataatataaatcacatcttaaattactattaattttccattct 211  Q
     |||| || || || || || || ||||||||||||| ||| ||||| | ||| ||   || ||| |  || |||| ||||| |   | ||| |||||||    
T  26313191 actgagtatcctttctgaatgaactgacctacactcagcaaattgcactgcattccaggaacatagagaacttcttcaattattgccactttcccattct 26313092  T
Q  212 ttctttcaataacaatctttcccataccttttccaactagtgttctatgatatgcaagcttcaccttgctgtttcttctagtgttgatttctttcaacca 311  Q
    ||| ||||||| |||| || ||||| |||| | |||| |    |||||||| |||||||||||||||  | ||||||| ||  |  | |||| | |||||    
T  26313091 ttccttcaatagcaatattccccattccttctgcaaccaagactctatgatctgcaagcttcacctttgtatttcttccaggatccacttctcttaacca 26312992  T
Q  312 attcttatttgcagtcatatgattagaacaaccattatctaaaaaccatctatctgacttgcgactttcattattggttgttttcaccattaacaagact 411  Q
      |||| ||| | ||||| ||||||||||||||| ||||||| ||||| || ||||| ||||  || |||||| | |||||| | ||||| |  || | |    
T  26312991 tgtcttgtttcctgtcatgtgattagaacaaccagtatctaagaaccaactttctgaattgcagctctcattactagttgttgtaaccatcatgaataat 26312892  T
Q  412 gtatcataatctaaatcttcttgtgaaagtatggcttgttcctcttcattctttacttgcttccgtttaccagtccaacattcagaagcataatgaccaa 511  Q
    |  ||| ||||| |||| ||||||| || | ||||||  || || ||||| |||  |||||| | |||||||| |||||||||||| ||||| || ||||    
T  26312891 gattcagaatctgaatcatcttgtgcaattttggcttcctcttcatcattttttgattgctttcctttaccagaccaacattcagaggcatagtgtccaa 26312792  T
Q  512 acttttcacaattataacaacatatcttcttcttatcaa 550  Q
    | || ||||| ||  ||||    ||||||||||||||||    
T  26312791 atttctcacatttgaaacactgaatcttcttcttatcaa 26312753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 651 - 757
Target Start/End: Complemental strand, 39795051 - 39794945
Alignment:
Q  651 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 750  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| |||||||| || | |||||||||||| |  ||||||||||||||||||||| | |    
T  39795051 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 39794952  T
Q  751 ttctttc 757  Q
    |||||||    
T  39794951 ttctttc 39794945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 550
Target Start/End: Complemental strand, 39795673 - 39795135
Alignment:
Q  13 tttcatatcagtttgaaatgtcctattctttgcaaggggatttttcagaactaacctttgattcttatcaaaaaatttcaaagagttatccttcattgt- 111  Q
    ||||||||  || ||||| || |||||||||||||| ||| |||||| ||||||||||||||  |||||||| || || || | ||| |||||||| ||     
T  39795673 tttcatattggtctgaaaagttctattctttgcaagaggagttttcaaaactaacctttgatgattatcaaacaacttaaaggtgttgtccttcatagta 39795574  T
Q  112 tctgaatagcccttttgcataaattgacctacactcaacaagttgcattacatccccataatataaatcacatcttaaattactattaattttccattct 211  Q
     |||| || || || || || || ||||||||||||| ||| ||||| | ||| ||   || ||| |  || |||| ||||| |   | ||| |||||||    
T  39795573 actgagtatcctttctgaatgaactgacctacactcagcaaattgcactgcattccaggaacatagagaacttcttcaattattgccactttcccattct 39795474  T
Q  212 ttctttcaataacaatctttcccataccttttccaactagtgttctatgatatgcaagcttcaccttgctgtttcttctagtgttgatttctttcaacca 311  Q
    ||| ||||||| |||| || ||||| |||| | |||| |    |||||||| |||||||||||||||  | ||||||| ||  |  | |||| | |||||    
T  39795473 ttccttcaatagcaatattccccattccttctgcaaccaagactctatgatctgcaagcttcacctttgtatttcttccaggatccacttctcttaacca 39795374  T
Q  312 attcttatttgcagtcatatgattagaacaaccattatctaaaaaccatctatctgacttgcgactttcattattggttgttttcaccattaacaagact 411  Q
      |||| ||| | ||||| ||||||||||||||| ||||||| ||||| || ||||| ||||  || |||||| | |||||| | ||||| |  || | |    
T  39795373 tgtcttgtttcctgtcatgtgattagaacaaccagtatctaagaaccaactttctgaattgcagctctcattactagttgttgtaaccatcatgaataat 39795274  T
Q  412 gtatcataatctaaatcttcttgtgaaagtatggcttgttcctcttcattctttacttgcttccgtttaccagtccaacattcagaagcataatgaccaa 511  Q
    |  ||| ||||| |||| ||||||| || | ||||||  || || ||||| |||  |||||| | |||||||| ||| |||||||| ||||| || ||||    
T  39795273 gattcagaatctgaatcatcttgtgcaattttggcttcctcttcatcattttttgattgctttcctttaccagaccagcattcagaggcatagtgtccaa 39795174  T
Q  512 acttttcacaattataacaacatatcttcttcttatcaa 550  Q
    | || ||||| ||  ||||    ||||||||||||||||    
T  39795173 atttctcacatttgaaacactgaatcttcttcttatcaa 39795135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 767 - 832
Target Start/End: Original strand, 25589982 - 25590047
Alignment:
Q  767 taattcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatcctttgcttc 832  Q
    ||||||| |||| ||||| ||||| |||| ||||||||| |||| |||||  ||||||||||||||    
T  25589982 taattcatgtgcttccaaggaactttgcaattcttcaatcttcatagttttaacatcctttgcttc 25590047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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