View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18643_low_10 (Length: 430)
Name: NF18643_low_10
Description: NF18643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18643_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 7 - 415
Target Start/End: Complemental strand, 41611156 - 41610748
Alignment:
| Q |
7 |
acatcatcaacaaaaattatatttggtcatgtcatttccaacccaattcaattacttggtaaaattggtggatttgtaactacaatcttagcaattcttg |
106 |
Q |
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| T |
41611156 |
acatcatcaacaaaaattatatttggtcatgtcatttccaacccaattcaattacttggtaaaattggtggatttgtaactacaatcttagcaattcttg |
41611057 |
T |
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| Q |
107 |
gtataagcctagctacaattacaaccaatattgctgccaatgttgtagcacctgcaaacgctcttgtaaatcttagtccaatgtggttcaattttagaag |
206 |
Q |
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| T |
41611056 |
gtataagcctagctacaattacaaccaatattgctgccaatgttgtagcacctgcaaacgctcttgtaaatcttagtccaatgtggttcaattttagaag |
41610957 |
T |
|
| Q |
207 |
aggagctatattaacagcatttcttggaattgcatttcaaccttggaagcttcttaaatcaagtgagacctttgtatatacttggttagttggttattct |
306 |
Q |
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| T |
41610956 |
aggagctatattaacagcatttcttggaattgcatttcaaccttggaagcttcttaaatcaagtgagagctttgtgtatacttggttagttggttattct |
41610857 |
T |
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| Q |
307 |
gcattgatgggtccaattggaggaattattctagtggattattatcttgtgaagaaaactaaattaagcattggagatttgtattcaagaaatccttatg |
406 |
Q |
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| T |
41610856 |
gcattgatgggtccaattggaggaattattctagtggattattatcttgtgaagaaaactaaattaagcattggagatttgtattcaagaaatcattatg |
41610757 |
T |
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| Q |
407 |
gtgcttact |
415 |
Q |
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| T |
41610756 |
gtgcttact |
41610748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 123; Significance: 5e-63; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 10 - 356
Target Start/End: Original strand, 27112687 - 27113033
Alignment:
| Q |
10 |
tcatcaacaaaaattatatttggtcatgtcatttccaacccaattcaattacttggtaaaattggtggatttgtaactacaatcttagcaattcttggta |
109 |
Q |
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||||| |||||| | ||||||||| | || ||||| || ||||||||| | ||||||| ||||||||||||| ||||| | | |||||| |||||| |
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| T |
27112687 |
tcatctacaaaagtgatatttggtgaagttatttcaaatccaattcaacttcttggtagaattggtggatttacaactagtgtacttgcaattgttggta |
27112786 |
T |
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| Q |
110 |
taagcctagctacaattacaaccaatattgctgccaatgttgtagcacctgcaaacgctcttgtaaatcttagtccaatgtggttcaattttagaagagg |
209 |
Q |
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|||| || || || | ||||| ||||||||||| |||||||| |||||||| || |||||||| ||||||| || ||||||| |||||||||||| |
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| T |
27112787 |
taagtcttgcaactttaacaactaatattgctgctaatgttgttgcacctgccaatgctcttgttaatcttaacccttcatggttcacttttagaagagg |
27112886 |
T |
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| Q |
210 |
agctatattaacagcatttcttggaattgcatttcaaccttggaagcttcttaaatcaagtgagacctttgtatatacttggttagttggttattctgca |
309 |
Q |
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| T |
27112887 |
tgctattttaactgcaatacttggaattgtgtttcaaccttggaggcttttgaagtctagtgagagttttgtttatacttggttagttggttattctgca |
27112986 |
T |
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| Q |
310 |
ttgatgggtccaattggaggaattattctagtggattattatcttgt |
356 |
Q |
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|||||||||||||||||||| ||| |||||||||||||||||||||| |
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| T |
27112987 |
ttgatgggtccaattggagggattgttctagtggattattatcttgt |
27113033 |
T |
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