View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18643_low_11 (Length: 417)
Name: NF18643_low_11
Description: NF18643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18643_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 348; Significance: 0; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 393
Target Start/End: Complemental strand, 9086439 - 9086044
Alignment:
| Q |
1 |
tacacagggagaagggaaagagttcgtcactgaagtagaaattatgggaaaaatacaccatatcaacgtggttcggttgcttggattttgcgcagag--- |
97 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9086439 |
tacacagggagaaggtaaagagttcatcactgaagtagaaattatgggaaaaatacaccatatcaacgtggttcggttgcttggattttgcgcagagcta |
9086340 |
T |
|
| Q |
98 |
-ggaatccatcgtgctcttgtatacaatttgtttccaaaaggttcactacaaagcttcatatttccgcctgataacaaggatcacttcatggggtgggag |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||| |
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| T |
9086339 |
gggaatccatcgtgctcttgtatacaatttgtttccaaaaggttcactacaaagcttcatattttcacctgataacacggatcacttcatggggtgggag |
9086240 |
T |
|
| Q |
197 |
aagctgcaacaaattagtcttggtatcgcaaaaggaatcgagtatcttcatgagggttgtagccatccaatcctgcactttgacattaaacctcacaatg |
296 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
9086239 |
aagctgca-caaattagtcttggtatcgcaaaaggaatcgagtatcttcatgagggttgtagccatccaatcctgcactttgacattaaccctcacaatg |
9086141 |
T |
|
| Q |
297 |
ttttgctagatgaaaccttcactccaaaaatttcagactttggactcgccaaattatgttccaagaatattagtgtagtgtccatgacagctgctag |
393 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9086140 |
ttttgctagatgaaaccttcactccaaaaatttcagactttggactcgccaaattatgttccaagaatattagtgtagtgtccatgacagctgctag |
9086044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 396
Target Start/End: Complemental strand, 9125608 - 9125213
Alignment:
| Q |
1 |
tacacagggagaagggaaagagttcgtcactgaagtagaaattatgggaaaaatacaccatatcaacgtggttcggttgcttggattttgcgcagaggga |
100 |
Q |
| |
|
||||||||||||||||| |||||| |||| ||||| ||||||||||| | ||| ||||| || ||||||||||| |||||||| | |||||||| ||| |
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|
| T |
9125608 |
tacacagggagaagggatagagtttatcacagaagtggaaattatgggtacaatccaccacattaacgtggttcgcttgcttggctactgcgcagatgga |
9125509 |
T |
|
| Q |
101 |
atccatcgtgctcttgtatacaatttgtttccaaaaggttcactacaaagcttcatatttccgcctgataacaaggatcacttcatggggtgggagaagc |
200 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||| || ||| |||||||||| ||||||||||||||||||| |
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| T |
9125508 |
atccatcgagctcttgtatacaatttgtttccaaaaggttcgctacaatgcttcatatttccaccggatgacaaggatcatttcatggggtgggagaagc |
9125409 |
T |
|
| Q |
201 |
tgcaacaaattagtcttggtatcgcaaaaggaatcgagtatcttcatgagggttgtagccatccaatcctgcactttgacattaaacctcacaatgtttt |
300 |
Q |
| |
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| |||| ||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||| || |||||||||||||| |
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|
| T |
9125408 |
tacaactaattagtcttggtgtagcaaaaggaattgagtatcttcatgagggttgtagccatccaattcttcactttgacatcaaccctcacaatgtttt |
9125309 |
T |
|
| Q |
301 |
gctagatgaaaccttcactccaaaaatttcagactttggactcgccaaattatgttccaagaatattagtgtagtgtccatgacagctgctagagg |
396 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| || |||||||| || |||||||| |
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| T |
9125308 |
gctagatgacaccttcactccaaaaatttcagactttggactcgccaaattatgttcaaagaatgttagtgttgtatccatgactgcggctagagg |
9125213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 393
Target Start/End: Complemental strand, 9070140 - 9069748
Alignment:
| Q |
1 |
tacacagggagaagggaaagagttcgtcactgaagtagaaattatgggaaaaatacaccatatcaacgtggttcggttgcttggattttgcgcagaggga |
100 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||||| ||||||||||| ||||| ||||||||||| |||||||| |||||||| ||||||||||| ||| |
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|
| T |
9070140 |
tacacaaggagaagggaaagagttcatcactgaagtggaaattatgggcaaaattcaccatatcaatgtggttcgtttgcttggcttttgcgcagaagga |
9070041 |
T |
|
| Q |
101 |
atccatcgtgctcttgtatacaatttgtttccaaaaggttcactacaaagcttcatatttccgcctgataacaaggatcacttcatggggtgggagaagc |
200 |
Q |
| |
|
| || | ||||| ||||||||||| ||| | |||||||| || ||||||||||||||||| || |||||||||||| | ||||||||||||||||||| |
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|
| T |
9070040 |
gttcactgcgctctagtatacaattttttttcgaaaggttctctgcaaagcttcatatttccaccggataacaaggattatttcatggggtgggagaagc |
9069941 |
T |
|
| Q |
201 |
tgcaacaaattagtcttggtatcgcaaaaggaatcgagtatcttcatgagggttgtagccatccaatcctgcactttgacattaaacctcacaatgtttt |
300 |
Q |
| |
|
| |||||||||||| |||||| ||||||| ||||||||||||||||||||| |||||||||||||| | ||||||||||| || |||| ||||||||| |
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|
| T |
9069940 |
tacaacaaattagtactggtatagcaaaagcaatcgagtatcttcatgagggctgtagccatccaattattcactttgacatcaaccctcgcaatgtttt |
9069841 |
T |
|
| Q |
301 |
gctagatgaaaccttcactccaaaaatttcagactttggactcgccaaattatgttccaagaatattagtgtagtgtccatgacagctgctag |
393 |
Q |
| |
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| ||||||| ||||||||||||||||||| |||||||| ||||||||||||||| |||||||| ||||| |||||||||||||||||||||| |
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| T |
9069840 |
gttagatgattccttcactccaaaaatttctgactttgggctcgccaaattatgtgccaagaatcttagtatagtgtccatgacagctgctag |
9069748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 392
Target Start/End: Complemental strand, 8862030 - 8861639
Alignment:
| Q |
1 |
tacacagggagaagggaaagagttcgtcactgaagtagaaattatgggaaaaatacaccatatcaacgtggttcggttgcttggattttgcgcagaggga |
100 |
Q |
| |
|
|||| |||||||||||||||||||| ||| |||||| | ||||||||| ||||| ||||| |||||||||||||| |||||||| || |||||||| ||| |
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|
| T |
8862030 |
tacagagggagaagggaaagagttcatcaatgaagtgggaattatgggcaaaatccaccacatcaacgtggttcgtttgcttggcttctgcgcagatgga |
8861931 |
T |
|
| Q |
101 |
atccatcgtgctcttgtatacaatttgtttccaaaaggttcactacaaagcttcatatttccgcctgataacaaggatcacttcatggggtgggagaagc |
200 |
Q |
| |
|
|| || || |||||||| |||||||| |||||||| ||||| |||||||||||||||||||| || ||||||||||| || ||||||||||||||||||| |
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|
| T |
8861930 |
attcaccgcgctcttgtctacaatttatttccaaatggttcgctacaaagcttcatatttccaccagataacaaggaccatttcatggggtgggagaagc |
8861831 |
T |
|
| Q |
201 |
tgcaacaaattagtcttggtatcgcaaaaggaatcgagtatcttcatgagggttgtagccatccaatcctgcactttgacattaaacctcacaatgtttt |
300 |
Q |
| |
|
| ||||||||| || | || || || |||||||| |||||||| ||| ||||||| ||||||||| | ||||| ||||| || |||||||||||||| |
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|
| T |
8861830 |
tacaacaaattggtataggaattgccaaaggaattgagtatctacatctcggttgtaaccatccaataattcacttcgacatcaaccctcacaatgtttt |
8861731 |
T |
|
| Q |
301 |
gctagatgaaaccttcactccaaaaatttcagactttggactcgccaaattatgttccaagaatattagtgtagtgtccatgacagctgcta |
392 |
Q |
| |
|
|||||||||| |||| || ||||||||||| || ||||| |||||||||||||||||||||||| |||| || ||||||||||||||||||| |
|
|
| T |
8861730 |
gctagatgaatcctttacgccaaaaatttcggattttggtctcgccaaattatgttccaagaatcttagcgttgtgtccatgacagctgcta |
8861639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 8 - 393
Target Start/End: Complemental strand, 8979423 - 8979038
Alignment:
| Q |
8 |
ggagaagggaaagagttcgtcactgaagtagaaattatgggaaaaatacaccatatcaacgtggttcggttgcttggattttgcgcagagggaatccatc |
107 |
Q |
| |
|
||||| |||||||||||| | | ||||| | ||||||||||||||| ||||| ||||| || ||||| |||||||| || || ||||||||||| |||| |
|
|
| T |
8979423 |
ggagacgggaaagagttcattagcgaagtgggaattatgggaaaaatccaccacatcaatgttgttcgattgcttggcttctgtgcagagggaattcatc |
8979324 |
T |
|
| Q |
108 |
gtgctcttgtatacaatttgtttccaaaaggttcactacaaagcttcatatttccgcctgataacaaggatcacttcatggggtgggagaagctgcaaca |
207 |
Q |
| |
|
||| |||||| |||||||| ||| |||| ||||| ||||||| ||||||||||| || |||||| |||| ||||||||||||||||||| |||||| | |
|
|
| T |
8979323 |
gtgttcttgtctacaatttattttcaaagggttcgttacaaagtttcatatttcctccagataacgaggaccacttcatggggtgggagatgctgcagaa |
8979224 |
T |
|
| Q |
208 |
aattagtcttggtatcgcaaaaggaatcgagtatcttcatgagggttgtagccatccaatcctgcactttgacattaaacctcacaatgttttgctagat |
307 |
Q |
| |
|
|||| || |||| || || | |||||| |||||||||||| |||||||||| ||| ||||||| || |||||||| || ||||||||||||||||| ||| |
|
|
| T |
8979223 |
aattggtattggcatagccagaggaattgagtatcttcatcagggttgtagtcattcaatccttcattttgacatcaaccctcacaatgttttgctcgat |
8979124 |
T |
|
| Q |
308 |
gaaaccttcactccaaaaatttcagactttggactcgccaaattatgttccaagaatattagtgtagtgtccatgacagctgctag |
393 |
Q |
| |
|
|| || || ||||||||||||||||| ||||| ||||||||||||||||||| |||| ||||||||||||||||||||| ||||| |
|
|
| T |
8979123 |
gacacattaactccaaaaatttcagattttggtctcgccaaattatgttccatgaattgtagtgtagtgtccatgacagcggctag |
8979038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 226 - 357
Target Start/End: Complemental strand, 9106469 - 9106338
Alignment:
| Q |
226 |
aaaaggaatcgagtatcttcatgagggttgtagccatccaatcctgcactttgacattaaacctcacaatgttttgctagatgaaaccttcactccaaaa |
325 |
Q |
| |
|
||||||||| ||||||||||| || | ||||| ||||||||| || ||||||||||| || |||||||||||||||| |||||| | ||||| |||||| |
|
|
| T |
9106469 |
aaaaggaattgagtatcttcacgaagattgtatccatccaattcttcactttgacatcaaccctcacaatgttttgcaagatgacaaattcacgccaaaa |
9106370 |
T |
|
| Q |
326 |
atttcagactttggactcgccaaattatgttc |
357 |
Q |
| |
|
||||||| ||||| | |||||||| ||||| |
|
|
| T |
9106369 |
gtttcagattttggttttgccaaattttgttc |
9106338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 43 - 246
Target Start/End: Complemental strand, 9420873 - 9420670
Alignment:
| Q |
43 |
tatgggaaaaatacaccatatcaacgtggttcggttgcttggattttgcgcagagggaatccatcgtgctcttgtatacaatttgtttccaaaaggttca |
142 |
Q |
| |
|
|||||||||||| || || ||||| || ||||| ||| ||||||||||||| || ||| | | ||||||||||| || ||||| |||||||| ||||| |
|
|
| T |
9420873 |
tatgggaaaaattcatcacatcaatgttgttcgcttggttggattttgcgccgatggatcctaccgtgctcttgtttataatttctttccaaatggttcg |
9420774 |
T |
|
| Q |
143 |
ctacaaagcttcatatttccgcctgataacaaggatcacttcatggggtgggagaagctgcaacaaattagtcttggtatcgcaaaaggaatcgagtatc |
242 |
Q |
| |
|
|||| | ||||||| | |||||| | | ||| || || | || ||||||||||| ||||||||| |||||| || || ||||| || ||||||| |
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|
| T |
9420773 |
ttacagaacttcataacccgacctgatgatatggaccattttctcggatgggagaagctacaacaaattgctcttggcatagccaaaggtattgagtatc |
9420674 |
T |
|
| Q |
243 |
ttca |
246 |
Q |
| |
|
|||| |
|
|
| T |
9420673 |
ttca |
9420670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 43 - 246
Target Start/End: Complemental strand, 9437956 - 9437753
Alignment:
| Q |
43 |
tatgggaaaaatacaccatatcaacgtggttcggttgcttggattttgcgcagagggaatccatcgtgctcttgtatacaatttgtttccaaaaggttca |
142 |
Q |
| |
|
|||||||||||| || || ||||| || ||||| ||| ||||||||||||| || ||| | | ||||||||||| || ||||| |||||||| ||||| |
|
|
| T |
9437956 |
tatgggaaaaattcatcacatcaatgttgttcgcttggttggattttgcgccgatggatcctaccgtgctcttgtttataatttctttccaaatggttcg |
9437857 |
T |
|
| Q |
143 |
ctacaaagcttcatatttccgcctgataacaaggatcacttcatggggtgggagaagctgcaacaaattagtcttggtatcgcaaaaggaatcgagtatc |
242 |
Q |
| |
|
|||| | ||||||| | |||||| | | ||| || || | || ||||||||||| ||||||||| |||||| || || ||||| || ||||||| |
|
|
| T |
9437856 |
ttacagaacttcataacccgacctgatgatatggaccattttctcggatgggagaagctacaacaaattgctcttggcatagccaaaggtattgagtatc |
9437757 |
T |
|
| Q |
243 |
ttca |
246 |
Q |
| |
|
|||| |
|
|
| T |
9437756 |
ttca |
9437753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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