View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18643_low_12 (Length: 395)
Name: NF18643_low_12
Description: NF18643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18643_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 9 - 379
Target Start/End: Complemental strand, 15169816 - 15169443
Alignment:
| Q |
9 |
catcatcatcatcattatcaaaatcagttttaaatactgaatcagattggatggctgagattaaaaactgcgcgacatagttacttcaacaaatacgttt |
108 |
Q |
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| T |
15169816 |
catcatcatcatcattatcaaaatcagttttaaatactgaatcagattggatggctgagattaaaaactgcgcgacatagttacttcaacaaatacgttt |
15169717 |
T |
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| Q |
109 |
tctatatccaatcacatttcactatttactagtgcaagtattttagaaaataacattatggtatatctgaatagtaagatctgattgaatgtatgtgtaa |
208 |
Q |
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| T |
15169716 |
tctatatccaatcacatttcactatttactagtgcaagtattttagaaaataacattatggtatatctgaatagtaagatctgattgaatgtatgtgtaa |
15169617 |
T |
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| Q |
209 |
aacttttctacacatataaattaaagtt---actatgataacaaaaagtttcactaaaggctaacctttatggcgcttatagcgactgttgcattgaggg |
305 |
Q |
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||||||||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15169616 |
aacttttctacgcatataaattaaagttactactacgataacaaaaagtttcactaaaggctaacctttatggcgcttatagcgactgttgcattgaggg |
15169517 |
T |
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| Q |
306 |
caacattgattcccttcactcctctcatactcataacaaggcctacaaacaggaaatgcacacacatgacaagc |
379 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
15169516 |
caacattgattcccttcactcctctcatactcataacaaggcttacaaacaggaaatgcacacacatgacaagc |
15169443 |
T |
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