View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18643_low_13 (Length: 385)

Name: NF18643_low_13
Description: NF18643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18643_low_13
NF18643_low_13
[»] chr1 (5 HSPs)
chr1 (9-335)||(31239902-31240228)
chr1 (36-193)||(31240143-31240300)
chr1 (9-121)||(31240553-31240665)
chr1 (76-146)||(31240501-31240571)
chr1 (9-98)||(31240451-31240539)
[»] chr8 (19 HSPs)
chr8 (54-172)||(35423292-35423410)
chr8 (36-193)||(35419020-35419177)
chr8 (9-116)||(35419092-35419199)
chr8 (227-369)||(35423383-35423540)
chr8 (22-121)||(35423059-35423158)
chr8 (21-103)||(35418810-35418892)
chr8 (75-156)||(35418660-35418741)
chr8 (27-116)||(35418894-35418983)
chr8 (10-194)||(35418694-35418884)
chr8 (63-127)||(35418957-35419021)
chr8 (63-211)||(35423001-35423149)
chr8 (75-122)||(35418633-35418680)
chr8 (34-121)||(35422945-35423032)
chr8 (122-194)||(35418890-35418962)
chr8 (63-211)||(35423127-35423275)
chr8 (29-123)||(35423192-35423286)
chr8 (331-369)||(35429642-35429680)
chr8 (63-127)||(35419173-35419236)
chr8 (36-68)||(35419235-35419267)


Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 9 - 335
Target Start/End: Complemental strand, 31240228 - 31239902
Alignment:
Q  9 gaagaatatcattttgaacagtatcctcataattataattatcaacaaaatatggatttggtagcggaattggaagatgatgatttgctaaatgaattgg 108  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  31240228 gaagaatatcattttaaacagtatcctcataattataattatcaacaaaatatggatttggtagcagaattggaagatgatgatttgctaaatgaattgg 31240129  T
Q  109 aagaagatcattttgagcaatatcctcatagttataataatcaacaaaataagaatttgctagatgaattgaaaggtaatgatttttcaaaggaattgaa 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||    
T  31240128 aagaagatcattttgagcaatatcctcatagttataataatcaacaaaataagtatttgctagatgaattgaaagataatgatttttcaaaggaattgaa 31240029  T
Q  209 agatgattattctgaattatgatcaacaaaatgatgattagctagaggagttagaagatgattctatctcttcatattctatttgtttgaagcagttttg 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  31240028 agatgattattctgaattatgatcaacaaaatgatgattagctagaggagttagaagatgattctatctcttcatgttctatttgtttgaagcagttttg 31239929  T
Q  309 cagtgcatcaaagaaagagctttttca 335  Q
    |||||||||||||||||||||||||||    
T  31239928 cagtgcatcaaagaaagagctttttca 31239902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 36 - 193
Target Start/End: Complemental strand, 31240300 - 31240143
Alignment:
Q  36 cataattataattatcaacaaaatatggatttggtagcggaattggaagatgatgatttgctaaatgaattggaagaagatcattttgagcaatatcctc 135  Q
    |||||||||||| ||| ||||||| || ||||| |||   || ||||||||||| |||| ||| | ||| |||||||| |||||||| | || |||||||    
T  31240300 cataattataatgatccacaaaatgtgaatttgctagatcaaatggaagatgattattttctacaagaactggaagaatatcattttaaacagtatcctc 31240201  T
Q  136 atagttataataatcaacaaaataagaatttgctagatgaattgaaaggtaatgattt 193  Q
    ||| ||||||| |||||||||||| | ||||| |||  |||||| ||| | |||||||    
T  31240200 ataattataattatcaacaaaatatggatttggtagcagaattggaagatgatgattt 31240143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 121
Target Start/End: Complemental strand, 31240665 - 31240553
Alignment:
Q  9 gaagaatatcattttgaacagtatcctcataattataattatcaacaaaatatggatttggtagcggaattggaagatgatgatttgctaaatgaattgg 108  Q
    ||||||| || |||||| ||  ||| ||| |||| |||| |||| ||||||  ||||||| ||| ||||||||||||||| || |||||| |  ||||||    
T  31240665 gaagaatgtccttttgagcaacatcatcacaattttaatgatcagcaaaatgaggatttgctagaggaattggaagatgacgagttgctacagaaattgg 31240566  T
Q  109 aagaagatcattt 121  Q
    |||||||| ||||    
T  31240565 aagaagatgattt 31240553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 146
Target Start/End: Complemental strand, 31240571 - 31240501
Alignment:
Q  76 aattggaagatgatgatttgctaaatgaattggaagaagatcattttgagcaatatcctcatagttataat 146  Q
    |||||||||| ||||||||||||   ||| | ||||||||| |||||||||| |||||| ||| |||||||    
T  31240571 aattggaagaagatgatttgctattggaactagaagaagattattttgagcagtatccttataattataat 31240501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 98
Target Start/End: Complemental strand, 31240539 - 31240451
Alignment:
Q  9 gaagaatatcattttgaacagtatcctcataattataattatcaacaaaatatggatttggtagcggaattggaagatgatgatttgcta 98  Q
    |||||| || ||||||| ||||||||| ||||||||||| || || ||| | |||||||| |||   |||||||||||| ||||||||||    
T  31240539 gaagaagattattttgagcagtatccttataattataatgat-aaaaaagtgtggatttgctagatcaattggaagatggtgatttgcta 31240451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 5e-32; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 54 - 172
Target Start/End: Original strand, 35423292 - 35423410
Alignment:
Q  54 caaaatatggatttggtagcggaattggaagatgatgatttgctaaatgaattggaagaagatcattttgagcaatatcctcatagttataataatcaac 153  Q
    |||||||||||||||| | |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||  || | ||||| ||||||    
T  35423292 caaaatatggatttggcaacggaattggaagatgatgatttgctagaggaattggaagaagatcattttgagcaatatccttgtaatgataatgatcaac 35423391  T
Q  154 aaaataagaatttgctaga 172  Q
    ||||| |  ||||||||||    
T  35423392 aaaatgatgatttgctaga 35423410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 36 - 193
Target Start/End: Original strand, 35419020 - 35419177
Alignment:
Q  36 cataattataattatcaacaaaatatggatttggtagcggaattggaagatgatgatttgctaaatgaattggaagaagatcattttgagcaatatcctc 135  Q
    |||||||||||| ||||||||||| |||||||| |||   || ||||||||||| || ||||| | |||||||||||||||||||||| ||| |||||||    
T  35419020 cataattataatgatcaacaaaatgtggatttgctagatcaactggaagatgataatctgctacaagaattggaagaagatcattttgggcagtatcctc 35419119  T
Q  136 atagttataataatcaacaaaataagaatttgctagatgaattgaaaggtaatgattt 193  Q
    ||| ||||| | |||||||||||| | ||||||||||| ||||| ||| | |||||||    
T  35419120 ataattatattgatcaacaaaatatggatttgctagatcaattggaagatgatgattt 35419177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 9 - 116
Target Start/End: Original strand, 35419092 - 35419199
Alignment:
Q  9 gaagaatatcattttgaacagtatcctcataattataattatcaacaaaatatggatttggtagcggaattggaagatgatgatttgctaaatgaattgg 108  Q
    |||||| |||||||||  ||||||||||||||||||| | |||||||||||||||||||| |||   ||||||||||||||||||||||| | |||||||    
T  35419092 gaagaagatcattttgggcagtatcctcataattatattgatcaacaaaatatggatttgctagatcaattggaagatgatgatttgctagaggaattgg 35419191  T
Q  109 aagaagat 116  Q
    ||||||||    
T  35419192 aagaagat 35419199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 227 - 369
Target Start/End: Original strand, 35423383 - 35423540
Alignment:
Q  227 atgatcaacaaaatgatgattagctagaggagttagaagatgattctatctcttcatattct---------------atttgtttgaagcagttttgcag 311  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |||||               |||||||||||  ||||||||||    
T  35423383 atgatcaacaaaatgatgatttgctagaggagttagaagatgattctatttcttcagattctattgatcaatgttcaatttgtttgaacaagttttgcag 35423482  T
Q  312 tgcatcaaagaaagagctttttcacacagaatgctctcatgtttttcataaagagtgt 369  Q
    || || | |||||||||| ||||| ||| |||||||||||||||||||| ||||||||    
T  35423483 tggattagagaaagagctctttcatacaaaatgctctcatgtttttcatgaagagtgt 35423540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 22 - 121
Target Start/End: Original strand, 35423059 - 35423158
Alignment:
Q  22 ttgaacagtatcctcataattataattatcaacaaaatatggatttggtagcggaattggaagatgatgatttgctaaatgaattggaagaagatcattt 121  Q
    |||| ||||||| || |||||||||| ||||||||| ||||||||||  ||   |||||||||||||||||||| || | ||||||||||||||| ||||    
T  35423059 ttgagcagtatcttcgtaattataatgatcaacaaagtatggatttgccagatcaattggaagatgatgatttgttagaggaattggaagaagatgattt 35423158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 103
Target Start/End: Original strand, 35418810 - 35418892
Alignment:
Q  21 tttgaacagtatcctcataattataattatcaacaaaatatggatttggtagcggaattggaagatgatgatttgctaaatga 103  Q
    ||||| ||||||| || |||||||||| ||||||||| | |||||||| ||| ||||||||||||||||||||| ||| ||||    
T  35418810 tttgagcagtatcttcgtaattataatgatcaacaaactgtggatttgctagaggaattggaagatgatgattttctacatga 35418892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 75 - 156
Target Start/End: Original strand, 35418660 - 35418741
Alignment:
Q  75 gaattggaagatgatgatttgctaaatgaattggaagaagatcattttgagcaatatcctcatagttataataatcaacaaa 156  Q
    ||||||||||| |||||||| |||   |||||| |||||||||||||||||||  ||||||||| ||||||| |||||||||    
T  35418660 gaattggaagaagatgattttctactggaattgcaagaagatcattttgagcagaatcctcataattataatgatcaacaaa 35418741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 27 - 116
Target Start/End: Original strand, 35418894 - 35418983
Alignment:
Q  27 cagtatcctcataattataattatcaacaaaatatggatttggtagcggaattggaagatgatgatttgctaaatgaattggaagaagat 116  Q
    ||||||||||||| ||||||| ||||||||||| |||||||| |||   |||||||||||||||||||  || | |||| ||||||||||    
T  35418894 cagtatcctcatatttataatgatcaacaaaatgtggatttgctagatcaattggaagatgatgattttgtagaggaatgggaagaagat 35418983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 10 - 194
Target Start/End: Original strand, 35418694 - 35418884
Alignment:
Q  10 aagaatatcattttgaacagtatcctcataattataattatcaacaaaatatggatttggtagcggaattggaa---gatgatgatttgctaaatgaatt 106  Q
    ||||| |||||||||| ||| ||||||||||||||||| ||||||||| | |||||||   ||   ||||||||    ||||||||||| || | |||||    
T  35418694 aagaagatcattttgagcagaatcctcataattataatgatcaacaaagtttggatttttcagatcaattggaatataatgatgatttgttagaggaatt 35418793  T
Q  107 g---gaagaagatcattttgagcaatatcctcatagttataataatcaacaaaataagaatttgctagatgaattgaaaggtaatgatttt 194  Q
    |   ||||||||||  |||||||| |||| || || ||||||| ||||||||| |  | |||||||||| |||||| ||| | ||||||||    
T  35418794 gggagaagaagatcgatttgagcagtatcttcgtaattataatgatcaacaaactgtggatttgctagaggaattggaagatgatgatttt 35418884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 63 - 127
Target Start/End: Original strand, 35418957 - 35419021
Alignment:
Q  63 gatttggtagcggaattggaagatgatgatttgctaaatgaattggaagaagatcattttgagca 127  Q
    ||||| |||| ||||| |||||| |||||||  ||| ||||||||||||||||||||||||||||    
T  35418957 gattttgtagaggaatgggaagaagatgattcactacatgaattggaagaagatcattttgagca 35419021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 63 - 211
Target Start/End: Original strand, 35423001 - 35423149
Alignment:
Q  63 gatttggtagcggaattggaagatgatgatttgctaaatgaattggaagaagatcattttgagcaatatcctcatagttataataatcaacaaaataaga 162  Q
    |||||| ||| | |||||||||| |||||||||||| | ||||  ||||||||||   ||||||| |||| || || ||||||| ||||||||| || |     
T  35423001 gatttgctagagaaattggaagaagatgatttgctacaggaatcagaagaagatcgacttgagcagtatcttcgtaattataatgatcaacaaagtatgg 35423100  T
Q  163 atttgctagatgaattgaaaggtaatgatttttcaaaggaattgaaaga 211  Q
    |||||| |||| ||||| ||| | ||||||| | | |||||||| ||||    
T  35423101 atttgccagatcaattggaagatgatgatttgttagaggaattggaaga 35423149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 75 - 122
Target Start/End: Original strand, 35418633 - 35418680
Alignment:
Q  75 gaattggaagatgatgatttgctaaatgaattggaagaagatcatttt 122  Q
    |||||||||| ||||||||||||| ||||||||||||||||| |||||    
T  35418633 gaattggaaggtgatgatttgctacatgaattggaagaagatgatttt 35418680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 34 - 121
Target Start/End: Original strand, 35422945 - 35423032
Alignment:
Q  34 ctcataattataattatcaacaaaatatggatttggtagcggaattggaagatgatgatttgctaaatgaattggaagaagatcattt 121  Q
    |||||||||||||| ||||||||| | ||||||||  |    ||||||||||||||||||||||| |  |||||||||||||| ||||    
T  35422945 ctcataattataatgatcaacaaagtgtggatttgccatatcaattggaagatgatgatttgctagagaaattggaagaagatgattt 35423032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 194
Target Start/End: Original strand, 35418890 - 35418962
Alignment:
Q  122 tgagcaatatcctcatagttataataatcaacaaaataagaatttgctagatgaattgaaaggtaatgatttt 194  Q
    |||||| |||||||||| ||||||| |||||||||||  | ||||||||||| ||||| ||| | ||||||||    
T  35418890 tgagcagtatcctcatatttataatgatcaacaaaatgtggatttgctagatcaattggaagatgatgatttt 35418962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 211
Target Start/End: Original strand, 35423127 - 35423275
Alignment:
Q  63 gatttggtagcggaattggaagatgatgatttgctaaatgaattggaagaagatcattttgagcaatatcctcatagttataataatcaacaaaataaga 162  Q
    |||||| ||| |||||||||||| |||||||||||| | ||||  ||||||||||  |||||||  |||| || || |||| || |||||||||||  |     
T  35423127 gatttgttagaggaattggaagaagatgatttgctacaggaatcagaagaagatcgatttgagcggtatcttcgtaattatcatgatcaacaaaatgtgg 35423226  T
Q  163 atttgctagatgaattgaaaggtaatgatttttcaaaggaattgaaaga 211  Q
    |||| |||||| || || ||| | ||||||||  | |||||||| ||||    
T  35423227 atttcctagatcaaatggaagatgatgattttctacaggaattggaaga 35423275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 123
Target Start/End: Original strand, 35423192 - 35423286
Alignment:
Q  29 gtatcctcataattataattatcaacaaaatatggatttggtagcggaattggaagatgatgatttgctaaatgaattggaagaagatcattttg 123  Q
    ||||| || ||||||| || ||||||||||| |||||||  |||   || |||||||||||||||| ||| | |||||||||||  |||||||||    
T  35423192 gtatcttcgtaattatcatgatcaacaaaatgtggatttcctagatcaaatggaagatgatgattttctacaggaattggaagagtatcattttg 35423286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 331 - 369
Target Start/End: Original strand, 35429642 - 35429680
Alignment:
Q  331 tttcacacagaatgctctcatgtttttcataaagagtgt 369  Q
    ||||| ||| |||||||||||||||||||||||||||||    
T  35429642 tttcatacaaaatgctctcatgtttttcataaagagtgt 35429680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 127
Target Start/End: Original strand, 35419173 - 35419236
Alignment:
Q  63 gatttggtagcggaattggaagatgatgatttgctaaatgaattggaagaagatcattttgagca 127  Q
    |||||| ||| |||||||||||| |||||||  ||| | ||| ||||||||||||||||||||||    
T  35419173 gatttgctagaggaattggaagaagatgattcactaca-gaactggaagaagatcattttgagca 35419236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 68
Target Start/End: Original strand, 35419235 - 35419267
Alignment:
Q  36 cataattataattatcaacaaaatatggatttg 68  Q
    |||||||||||| ||||||||||||||||||||    
T  35419235 cataattataatgatcaacaaaatatggatttg 35419267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University