View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18643_low_17 (Length: 307)
Name: NF18643_low_17
Description: NF18643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18643_low_17 |
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| [»] chr6 (6 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 64; Significance: 5e-28; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 232 - 307
Target Start/End: Original strand, 11165352 - 11165427
Alignment:
| Q |
232 |
ttgttctgcaaccttattatcttcaagccacttaaagaccaaatcaagtgcattattgatcttttccttttctttt |
307 |
Q |
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| T |
11165352 |
ttgttctgcaaccttattatcttcaagccacttaaagaccaaatcaactgcgttattgatattttccttttctttt |
11165427 |
T |
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Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 195 - 307
Target Start/End: Original strand, 11274926 - 11275038
Alignment:
| Q |
195 |
cacttgaaagcatgctgctataatattcaaattcgtattgttctgcaaccttattatcttcaagccacttaaagaccaaatcaagtgcattattgatctt |
294 |
Q |
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| T |
11274926 |
cacttgaaagaatgctcctataacattcaaaatcttgttgttctgcaaccacattaacgtcaagccacttaaagaccaaatcagttgcattattgatgtt |
11275025 |
T |
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| Q |
295 |
ttccttttctttt |
307 |
Q |
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| T |
11275026 |
ttccttttctttt |
11275038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 195 - 307
Target Start/End: Original strand, 11169542 - 11169654
Alignment:
| Q |
195 |
cacttgaaagcatgctgctataatattcaaattcgtattgttctgcaaccttattatcttcaagccacttaaagaccaaatcaagtgcattattgatctt |
294 |
Q |
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|||||||||| ||||| ||||||| |||||| || | ||||||||||||| |||| | |||||||||||||||||||||||| ||| |||||||| || |
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| T |
11169542 |
cacttgaaagaatgctactataatgttcaaaatcttgttgttctgcaaccacattaacgtcaagccacttaaagaccaaatcagttgcgttattgatgtt |
11169641 |
T |
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| Q |
295 |
ttccttttctttt |
307 |
Q |
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| T |
11169642 |
tgccttttctttt |
11169654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 195 - 307
Target Start/End: Original strand, 11208364 - 11208476
Alignment:
| Q |
195 |
cacttgaaagcatgctgctataatattcaaattcgtattgttctgcaaccttattatcttcaagccacttaaagaccaaatcaagtgcattattgatctt |
294 |
Q |
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|||||||||| ||||| |||||| | ||||| || | ||||||| | ||||||||| | ||||||||| | ||||||||||||| ||| ||||||||||| |
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| T |
11208364 |
cacttgaaagaatgctcctataacactcaaaatcttgttgttctactaccttattagcgtcaagccacatgaagaccaaatcaactgcgttattgatctt |
11208463 |
T |
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| Q |
295 |
ttccttttctttt |
307 |
Q |
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| T |
11208464 |
ttccttttctttt |
11208476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 195 - 307
Target Start/End: Original strand, 11155263 - 11155375
Alignment:
| Q |
195 |
cacttgaaagcatgctgctataatattcaaattcgtattgttctgcaaccttattatcttcaagccacttaaagaccaaatcaagtgcattattgatctt |
294 |
Q |
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|||||||||| ||||| ||||||| ||||||| | |||||| |||| | ||| | || |||||| ||||||||||||||||||||||||||||||| |
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| T |
11155263 |
cacttgaaagaatgctcgtataatactcaaattgttcttgttccgcaatcacgttaacatcgagccacgtaaagaccaaatcaagtgcattattgatctt |
11155362 |
T |
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| Q |
295 |
ttccttttctttt |
307 |
Q |
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||||||||||||| |
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| T |
11155363 |
ttccttttctttt |
11155375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 195 - 307
Target Start/End: Original strand, 11195710 - 11195822
Alignment:
| Q |
195 |
cacttgaaagcatgctgctataatattcaaattcgtattgttctgcaaccttattatcttcaagccacttaaagaccaaatcaagtgcattattgatctt |
294 |
Q |
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|||||||||| ||||| ||||||| ||||||| | |||||| |||||| ||| | || |||||| | ||||||||||||| ||| ||||||||||| |
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| T |
11195710 |
cacttgaaagaatgctcgtataatactcaaattgttcttgttccgcaaccacgttaacatcgagccacatgaagaccaaatcaattgctttattgatctt |
11195809 |
T |
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| Q |
295 |
ttccttttctttt |
307 |
Q |
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||||||||||||| |
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| T |
11195810 |
ttccttttctttt |
11195822 |
T |
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