View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18643_low_19 (Length: 297)
Name: NF18643_low_19
Description: NF18643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18643_low_19 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 25330215 - 25330510
Alignment:
| Q |
1 |
tcatcattctcctcattcttctcattcaaatggaccataatccatcatggtttctttcatagttaaccaccactactaccataacacttcacaaacccaa |
100 |
Q |
| |
|
|||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25330215 |
tcatcattctcctcattcttctcaatgaaatgaaccataatccatcatggtttctttcatagttaaccaccactactaccataacacttcacaaacccaa |
25330314 |
T |
|
| Q |
101 |
aaacnnnnnnncgtagaaactaaattaatccatctaaattgaaaccagagagaaccacaaactcaaaaactacttgatacataataagaaactaagaaga |
200 |
Q |
| |
|
|||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
25330315 |
aaactttttttcgtagaaactaaattagtccacctaaattgaaaccagagagaaccacaaactcaaaaactacgtgatacataataagaaactaagaaga |
25330414 |
T |
|
| Q |
201 |
ttgaa-----------ttgtgactcttcaacttatggcttctattgctactttcttcaacaaattttactatgttttgatcctcattgtccacctt |
285 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25330415 |
ttgaatctttttttttttgtgactcttcaacttatggctactattgctactttcttcaacaaattttactatgttttgatcctcattgtccacctt |
25330510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 154
Target Start/End: Complemental strand, 13215199 - 13215159
Alignment:
| Q |
114 |
tagaaactaaattaatccatctaaattgaaaccagagagaa |
154 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |||| ||||| |
|
|
| T |
13215199 |
tagaaactaaattagtccatctaaattgaagccagggagaa |
13215159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University