View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18643_low_2 (Length: 735)

Name: NF18643_low_2
Description: NF18643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18643_low_2
NF18643_low_2
[»] chr3 (8 HSPs)
chr3 (19-725)||(28397465-28398177)
chr3 (198-293)||(36868660-36868755)
chr3 (46-147)||(32490306-32490407)
chr3 (214-323)||(55244107-55244216)
chr3 (46-145)||(44395029-44395128)
chr3 (43-156)||(48221380-48221493)
chr3 (46-180)||(25190978-25191112)
chr3 (94-148)||(27917219-27917273)
[»] chr4 (8 HSPs)
chr4 (198-323)||(10775790-10775915)
chr4 (43-147)||(10776001-10776105)
chr4 (474-564)||(40458356-40458446)
chr4 (100-180)||(1629084-1629164)
chr4 (200-251)||(38571146-38571197)
chr4 (48-78)||(37677453-37677483)
chr4 (499-624)||(68778-68902)
chr4 (213-262)||(20917774-20917823)
[»] scaffold0606 (1 HSPs)
scaffold0606 (55-183)||(9265-9393)
[»] chr5 (8 HSPs)
chr5 (47-175)||(6368479-6368607)
chr5 (46-146)||(43558397-43558497)
chr5 (198-262)||(1525431-1525495)
chr5 (198-252)||(32516347-32516401)
chr5 (91-156)||(3096826-3096891)
chr5 (46-147)||(3301448-3301549)
chr5 (197-262)||(17212870-17212935)
chr5 (46-143)||(21915485-21915582)
[»] chr8 (8 HSPs)
chr8 (33-193)||(25985128-25985287)
chr8 (46-147)||(41444886-41444987)
chr8 (196-252)||(10080342-10080398)
chr8 (223-306)||(5908456-5908539)
chr8 (32-74)||(5057286-5057328)
chr8 (198-244)||(16351178-16351224)
chr8 (193-246)||(25985324-25985377)
chr8 (226-323)||(38328175-38328272)
[»] chr2 (8 HSPs)
chr2 (198-308)||(7292777-7292887)
chr2 (50-156)||(876735-876841)
chr2 (46-143)||(12904568-12904664)
chr2 (28-87)||(14769880-14769939)
chr2 (93-147)||(38453202-38453256)
chr2 (91-180)||(11992655-11992744)
chr2 (46-147)||(24584188-24584289)
chr2 (499-624)||(40446912-40447036)
[»] chr1 (13 HSPs)
chr1 (94-194)||(7921574-7921675)
chr1 (474-620)||(37667798-37667947)
chr1 (43-147)||(40419277-40419381)
chr1 (81-193)||(6640760-6640873)
chr1 (474-564)||(43408466-43408556)
chr1 (499-624)||(337539-337663)
chr1 (198-314)||(6640918-6641035)
chr1 (32-147)||(28528166-28528281)
chr1 (222-312)||(7921740-7921830)
chr1 (24-78)||(32066919-32066973)
chr1 (221-262)||(12262110-12262151)
chr1 (226-311)||(37463247-37463332)
chr1 (212-261)||(43423540-43423589)
[»] chr7 (7 HSPs)
chr7 (32-147)||(43793622-43793737)
chr7 (499-624)||(22077134-22077258)
chr7 (46-147)||(38606605-38606705)
chr7 (226-314)||(24425898-24425986)
chr7 (214-309)||(47235557-47235652)
chr7 (46-147)||(32630206-32630307)
chr7 (266-323)||(42177383-42177440)


Alignment Details
Target: chr3 (Bit Score: 622; Significance: 0; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 622; E-Value: 0
Query Start/End: Original strand, 19 - 725
Target Start/End: Complemental strand, 28398177 - 28397465
Alignment:
Q  19 ccttccatatgaatagaagcaaaccatagtatatggaatgcaattttagcaaaa--ggtgaattgtttctagtatagaggtgaaagtttgttatcatatc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  28398177 ccttccatatgaatagaagcaaaccatagtatatggaatgcaattttagcaaaaaaggtgaattgtttctagtatagaggtgaaagtttgttatcatatc 28398078  T
Q  117 ttatcacaagttacacgatttaaatatcttgaatttatagcataaaacgaaggagaaattgaaggagtgtaaaccatcaaatgttttatgtaatgcgaaa 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28398077 ttatcacaagttacacgatttaaatatcttgaatttatagcataaaacgaaggagaaattgaaggagtgtaaaccatcaaatgttttatgtaatgcgaaa 28397978  T
Q  217 gtatcgctcaagttgaagggaaaattttattggacaacggtaagactaaaaatgttgcatgagacaaagtgttggatggtaaagaaccaacacaaatata 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28397977 gtatcgctcaagttgaagggaaaattttattggacaacggtaagactaaaaatgttgcatgagacaaagtgttggatggtaaagaaccaacacaaatata 28397878  T
Q  317 aattaagatgtcgatgttcttccttaaatacgagtcatggtaaatatatccccattttcaatagcccaagctgaagccataccctgcatttcttctctca 416  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  28397877 aattaagatgtcgatgtccttccttaaatacgagtcatggtaaatatatccccattttc-attgcccaagctgaagccataccctgcatttcttctctca 28397779  T
Q  417 catacattgaactatgagtgcattatgaacatcaattaatatattctaattcattgattccatgaattcataagttgagtctgttacacattgaaattac 516  Q
    || ||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  28397778 cacacattgaactatgagtgcattatgaacatc----aatatattctaattcattgattccatgaattcataagttgactctgttacacattgaaattac 28397683  T
Q  517 attctcccatcaatataattagccaaatcaagaaaacaaactccctccatctccatatggtcacacgcaaactatccccctatcacaatattctcttatt 616  Q
    |||||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28397682 attctcccatcaatataattagccaaatcttgaaaacaaactccctctatctccatatggtcacacgcaaactatccccctatcacaatattctcttatt 28397583  T
Q  617 atttcctagtctcctcatacacatctccatgatt---------cacattttctaagtacatcaattaattcatagcatctattctctcgaaaaattcata 707  Q
    ||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28397582 atttcctagtctcctcatacacatctccatgattcacattttccacattttctaagtacatcaattaattcatagcatctattctctcgaaaaattcata 28397483  T
Q  708 atttcgactaagtctgtg 725  Q
    ||||||||||||||||||    
T  28397482 atttcgactaagtctgtg 28397465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 198 - 293
Target Start/End: Complemental strand, 36868755 - 36868660
Alignment:
Q  198 tgttttatgtaatgcgaaagtatcgctcaagttgaagggaaaattttattggacaacggtaagactaaaaatgttgcatgagacaaagtgttggat 293  Q
    |||||||||| || |||||||||| | ||| |||||||||||| ||||| ||||||  ||||||||  |||||||| ||| |||||||||||||||    
T  36868755 tgttttatgtgatacgaaagtatcacccaatttgaagggaaaaatttatcggacaattgtaagactgcaaatgttgaatgggacaaagtgttggat 36868660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 46 - 147
Target Start/End: Complemental strand, 32490407 - 32490306
Alignment:
Q  46 agtatatggaatgcaattttagcaaaaggtgaattgtttctagtatagaggtgaaagtttgttatcatatcttatcacaagttacacgatttaaatatct 145  Q
    |||||||| ||||||| |||||||||||||||| ||||||||   || || ||||||||    |||||||| || |||||||||||| |||||||| |||    
T  32490407 agtatatgaaatgcaagtttagcaaaaggtgaagtgtttctaacttatagatgaaagttgaagatcatatcataccacaagttacacaatttaaatttct 32490308  T
Q  146 tg 147  Q
    ||    
T  32490307 tg 32490306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 214 - 323
Target Start/End: Original strand, 55244107 - 55244216
Alignment:
Q  214 aaagtatcgctcaagttgaagggaaaattttattggacaacggtaagactaaaaatgttgcatgagacaaagtgttggatggtaaagaaccaacacaaat 313  Q
    |||||| | ||||||||||||||||||||||||  |||| | |||||||  | ||||||| ||  ||||||||||||||  || |||||||||||  ||     
T  55244107 aaagtaccactcaagttgaagggaaaattttatctgacagctgtaagaccgacaatgttgtatcggacaaagtgttggactgtcaagaaccaacatgaaa 55244206  T
Q  314 ataaattaag 323  Q
    ||||||||||    
T  55244207 ataaattaag 55244216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 46 - 145
Target Start/End: Original strand, 44395029 - 44395128
Alignment:
Q  46 agtatatggaatgcaattttagcaaaaggtgaattgtttctagtatagaggtgaaagtttgttatcatatcttatcacaagttacacgatttaaatatct 145  Q
    |||||||||||||||| ||||||||||||  ||   |||||||| ||||| |||||||| |  |||||| |  | | |||||||||||||||||||||||    
T  44395029 agtatatggaatgcaactttagcaaaaggcaaagcatttctagtttagagatgaaagttggagatcataccacaacgcaagttacacgatttaaatatct 44395128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 156
Target Start/End: Original strand, 48221380 - 48221493
Alignment:
Q  43 catagtatatggaatgcaattttagcaaaaggtgaattgtttctagtatagaggtgaaagtttgttatcatatcttatcacaagttacacgatttaaata 142  Q
    ||||||||||| |||| ||||| ||||||||||| | |  |||||   ||||||||||||||    |||||||| || ||||||||||||  ||||||||    
T  48221380 catagtatatgtaatgtaatttcagcaaaaggtgtagtagttctatcttagaggtgaaagttgaagatcatatcataccacaagttacacattttaaata 48221479  T
Q  143 tcttgaatttatag 156  Q
    ||||| ||| ||||    
T  48221480 tcttggattcatag 48221493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 46 - 180
Target Start/End: Original strand, 25190978 - 25191112
Alignment:
Q  46 agtatatggaatgcaattttagcaaaaggtgaattgtttctagtatagaggtgaaagtttgttatcatatcttatcacaagttacacgatttaaatatct 145  Q
    ||||||||||||| || || ||||||||| ||| ||  ||||   | |||||||||||| |  |||||||| || | ||||||||||| |||||||||||    
T  25190978 agtatatggaatgtaacttcagcaaaaggagaagtgggtctaccttggaggtgaaagttggagatcatatcatagcccaagttacacggtttaaatatct 25191077  T
Q  146 tgaatttatagcataaaacgaaggagaaattgaag 180  Q
    ||  | ||||| | |||| || |||||||| ||||    
T  25191078 tgggtctatagtacaaaatgatggagaaatagaag 25191112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 94 - 148
Target Start/End: Original strand, 27917219 - 27917273
Alignment:
Q  94 aggtgaaagtttgttatcatatcttatcacaagttacacgatttaaatatcttga 148  Q
    ||||||||||| |  |||||||| |||| ||||||||||| ||||||||||||||    
T  27917219 aggtgaaagttggagatcatatcatatcccaagttacacggtttaaatatcttga 27917273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 5e-24; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 198 - 323
Target Start/End: Complemental strand, 10775915 - 10775790
Alignment:
Q  198 tgttttatgtaatgcgaaagtatcgctcaagttgaagggaaaattttattggacaacggtaagactaaaaatgttgcatgagacaaagtgttggatggta 297  Q
    |||||||||| ||||||||| | | |||||||||||||||||||||||||||||||||||||||| ||  |||||| ||| || | ||||||||  ||||    
T  10775915 tgttttatgtgatgcgaaagcacccctcaagttgaagggaaaattttattggacaacggtaagaccaatgatgttgtatgggaaagagtgttgggcggta 10775816  T
Q  298 aagaaccaacacaaatataaattaag 323  Q
    |||||| ||  |||| ||||||||||    
T  10775815 aagaactaatgcaaaaataaattaag 10775790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 43 - 147
Target Start/End: Complemental strand, 10776105 - 10776001
Alignment:
Q  43 catagtatatggaatgcaattttagcaaaaggtgaattgtttctagtatagaggtgaaagtttgttatcatatcttatcacaagttacacgatttaaata 142  Q
    |||| ||||||||||| ||||||||||||||| ||| |||||||||| |||||| ||||||| |  |||||||| || ||||||||||| | ||||||||    
T  10776105 catactatatggaatgtaattttagcaaaaggcgaaatgtttctagtttagaggggaaagttggagatcatatcataccacaagttacatggtttaaata 10776006  T
Q  143 tcttg 147  Q
    |||||    
T  10776005 tcttg 10776001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 474 - 564
Target Start/End: Original strand, 40458356 - 40458446
Alignment:
Q  474 ttccatgaattcataagttgagtctgttacacattgaaattacattctcccatcaatataattagccaaatcaagaaaacaaactccctcc 564  Q
    |||| ||||||||| ||||  ||| |||||||||| |||| ||  |||  |||||||| ||||| ||||||||||||||| ||||||||||    
T  40458356 ttccttgaattcattagtttggtcagttacacattaaaatcactctcttacatcaatacaattatccaaatcaagaaaaccaactccctcc 40458446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 100 - 180
Target Start/End: Original strand, 1629084 - 1629164
Alignment:
Q  100 aagtttgttatcatatcttatcacaagttacacgatttaaatatcttgaatttatagcataaaacgaaggagaaattgaag 180  Q
    |||||||  |||||||| |  |||||||||||   ||||||||||||||||| |||| ||||||||| |||||||| ||||    
T  1629084 aagtttgagatcatatcgtgccacaagttacatagtttaaatatcttgaattcatagtataaaacgatggagaaatagaag 1629164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 251
Target Start/End: Complemental strand, 38571197 - 38571146
Alignment:
Q  200 ttttatgtaatgcgaaagtatcgctcaagttgaagggaaaattttattggac 251  Q
    |||||||| |||||||||||  ||||||||||| |||||||||| |||||||    
T  38571197 ttttatgtgatgcgaaagtactgctcaagttgatgggaaaatttcattggac 38571146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 78
Target Start/End: Complemental strand, 37677483 - 37677453
Alignment:
Q  48 tatatggaatgcaattttagcaaaaggtgaa 78  Q
    |||||||||||||||||||||||||||||||    
T  37677483 tatatggaatgcaattttagcaaaaggtgaa 37677453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 499 - 624
Target Start/End: Original strand, 68778 - 68902
Alignment:
Q  499 gttacacattgaaattacattctcccatcaatataattagccaaatcaagaaaacaaactccctccatctccatatggtcacacgcaaactatcccccta 598  Q
    ||||||||||||||| |  |||| ||| ||||||||||||||||| | ||||  |||||||| |||  ||||| |||  || ||||||| | |  ||||     
T  68778 gttacacattgaaatcagtttcttccaccaatataattagccaaacctagaaggcaaactccatccccctccaaatgaccatacgcaaattgt-tccctc 68876  T
Q  599 tcacaatattctcttattatttccta 624  Q
    || |||||||||||||||| ||||||    
T  68877 tcgcaatattctcttattacttccta 68902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 213 - 262
Target Start/End: Original strand, 20917774 - 20917823
Alignment:
Q  213 gaaagtatcgctcaagttgaagggaaaattttattggacaacggtaagac 262  Q
    |||||||||  | ||||||||||||||||||||| | |||||||||||||    
T  20917774 gaaagtatcattgaagttgaagggaaaattttatcgaacaacggtaagac 20917823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0606 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: scaffold0606
Description:

Target: scaffold0606; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 55 - 183
Target Start/End: Original strand, 9265 - 9393
Alignment:
Q  55 aatgcaattttagcaaaaggtgaattgtttctagtatagaggtgaaagtttgttatcatatcttatcacaagttacacgatttaaatatcttgaatttat 154  Q
    |||| |||||||||||||||||||||||||||||| ||||||| |||||| |  |||||||| ||| |  ||||||||||||||||||||||   |||||    
T  9265 aatgtaattttagcaaaaggtgaattgtttctagtttagaggtaaaagttggagatcatatcatattattagttacacgatttaaatatcttaggtttat 9364  T
Q  155 agcataaaacgaaggagaaattgaaggag 183  Q
    |  ||||||||| | |||||| |||||||    
T  9365 attataaaacgatgaagaaatggaaggag 9393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 3e-16; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 47 - 175
Target Start/End: Complemental strand, 6368607 - 6368479
Alignment:
Q  47 gtatatggaatgcaattttagcaaaaggtgaattgtttctagtatagaggtgaaagtttgttatcatatcttatcacaagttacacgatttaaatatctt 146  Q
    ||||||||| || ||||||||||| |||||||   |||||| | |||||||||||| | |  |||||| | || |||||||||||| |||||||||||||    
T  6368607 gtatatggattgtaattttagcaagaggtgaaacatttctaatgtagaggtgaaagatggagatcataacataccacaagttacacaatttaaatatctt 6368508  T
Q  147 gaatttatagcataaaacgaaggagaaat 175  Q
    | || ||||| | ||||||| ||||||||    
T  6368507 gtatctatagtacaaaacgacggagaaat 6368479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 46 - 146
Target Start/End: Complemental strand, 43558497 - 43558397
Alignment:
Q  46 agtatatggaatgcaattttagcaaaaggtgaattgtttctagtatagaggtgaaagtttgttatcatatcttatcacaagttacacgatttaaatatct 145  Q
    ||||||||||||| |  ||||||||||||  || |||||||||   ||||||||||||| |  |||||| | || |||||||||||||||||||||||||    
T  43558497 agtatatggaatgtagatttagcaaaaggcaaagtgtttctagctcagaggtgaaagttggagatcatagcataccacaagttacacgatttaaatatct 43558398  T
Q  146 t 146  Q
    |    
T  43558397 t 43558397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 198 - 262
Target Start/End: Original strand, 1525431 - 1525495
Alignment:
Q  198 tgttttatgtaatgcgaaagtatcgctcaagttgaagggaaaattttattggacaacggtaagac 262  Q
    |||||||||| |||| |||||| |||| |||||||||||||| |||||| | |||||||||||||    
T  1525431 tgttttatgtgatgcaaaagtaccgcttaagttgaagggaaatttttatcgaacaacggtaagac 1525495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 198 - 252
Target Start/End: Original strand, 32516347 - 32516401
Alignment:
Q  198 tgttttatgtaatgcgaaagtatcgctcaagttgaagggaaaattttattggaca 252  Q
    |||||||||| || |||||||| ||||| |||||||||||||||| |||||||||    
T  32516347 tgttttatgtgatacgaaagtaccgctctagttgaagggaaaattatattggaca 32516401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 156
Target Start/End: Original strand, 3096826 - 3096891
Alignment:
Q  91 tagaggtgaaagtttgttatcatatcttatcacaagttacacgatttaaatatcttgaatttatag 156  Q
    |||||||||||||| |  ||||||||| | ||||||||||| | |||||||||||||  |||||||    
T  3096826 tagaggtgaaagttagagatcatatctcagcacaagttacatggtttaaatatcttgggtttatag 3096891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 147
Target Start/End: Original strand, 3301448 - 3301549
Alignment:
Q  46 agtatatggaatgcaattttagcaaaaggtgaattgtttctagtatagaggtgaaagtttgttatcatatcttatcacaagttacacgatttaaatatct 145  Q
    ||||||||||||| || || ||||||||| ||| ||  ||||   | |||||||||||| |  |||||||| || | ||||||||||| |||||||||||    
T  3301448 agtatatggaatgtaacttcagcaaaaggagaagtgggtctaccttggaggtgaaagttggagatcatatcataccccaagttacacggtttaaatatct 3301547  T
Q  146 tg 147  Q
    ||    
T  3301548 tg 3301549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 262
Target Start/End: Original strand, 17212870 - 17212935
Alignment:
Q  197 atgttttatgtaatgcgaaagtatcgctcaagttgaagggaaaattttattggacaacggtaagac 262  Q
    ||||||||||||||| || |||| | ||||||||||||| ||||| |||| ||||| | |||||||    
T  17212870 atgttttatgtaatgtgatagtaccactcaagttgaaggaaaaatcttatcggacatcagtaagac 17212935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 143
Target Start/End: Original strand, 21915485 - 21915582
Alignment:
Q  46 agtatatggaatgcaattttagcaaaaggtgaattgtttctagtatagaggtgaaagtttgttatcatatcttatcacaagttacacgatttaaatat 143  Q
    ||||||| ||||| ||||||| ||| |||||||   ||||||||  ||||||||||||| |  || ||||| ||  |||||||||||| |||||||||    
T  21915485 agtatattgaatgaaattttaacaagaggtgaagcatttctagtgcagaggtgaaagttcgagattatatcataatacaagttacacggtttaaatat 21915582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 33 - 193
Target Start/End: Original strand, 25985128 - 25985287
Alignment:
Q  33 agaagcaaaccatagtatatggaatgcaattttagcaaaaggtgaattgtttctagtatagaggtgaaagtttgttatcatatcttatcacaagttacac 132  Q
    ||||||||  || ||||||||||||| || |||||||| ||| |||   |||||||  |||||||||||||| |  |||||||| || ||||||||||||    
T  25985128 agaagcaagacagagtatatggaatgtaagtttagcaagaggcgaagcatttctagcttagaggtgaaagttgg--atcatatcataccacaagttacac 25985225  T
Q  133 gatttaaatatcttgaatttatagcataaaacgaaggagaaattgaaggag-tgtaaaccat 193  Q
    | ||||||||| ||| || ||||| | ||||  | |||||||| ||||||| ||||||||||    
T  25985226 ggtttaaatatattggatctatagtacaaaaatatggagaaatagaaggagatgtaaaccat 25985287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 147
Target Start/End: Complemental strand, 41444987 - 41444886
Alignment:
Q  46 agtatatggaatgcaattttagcaaaaggtgaattgtttctagtatagaggtgaaagtttgttatcatatcttatcacaagttacacgatttaaatatct 145  Q
    ||||||||||||| ||||||||||||||| |||   ||||||   |||||||||||| | |  |||||||| || ||||||||||  | |||||||||||    
T  41444987 agtatatggaatgtaattttagcaaaaggcgaagcatttctaacttagaggtgaaaggtggagatcatatcataccacaagttacttggtttaaatatct 41444888  T
Q  146 tg 147  Q
    ||    
T  41444887 tg 41444886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 196 - 252
Target Start/End: Complemental strand, 10080398 - 10080342
Alignment:
Q  196 aatgttttatgtaatgcgaaagtatcgctcaagttgaagggaaaattttattggaca 252  Q
    |||||||||||| || |||||||||| |||||||||||  |||| ||||||||||||    
T  10080398 aatgttttatgtgatacgaaagtatcactcaagttgaattgaaatttttattggaca 10080342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 223 - 306
Target Start/End: Original strand, 5908456 - 5908539
Alignment:
Q  223 ctcaagttgaagggaaaattttattggacaacggtaagactaaaaatgttgcatgagacaaagtgttggatggtaaagaaccaa 306  Q
    |||||||||||||||||| ||||||||| ||| ||| |||||  ||||||| |||  | | |||||||  ||||||||||||||    
T  5908456 ctcaagttgaagggaaaaatttattggataactgtatgactagcaatgttgtatggaaaagagtgttgactggtaaagaaccaa 5908539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 32 - 74
Target Start/End: Original strand, 5057286 - 5057328
Alignment:
Q  32 tagaagcaaaccatagtatatggaatgcaattttagcaaaagg 74  Q
    ||||||||||||| ||||||| |||||||| ||||||||||||    
T  5057286 tagaagcaaaccaaagtatattgaatgcaagtttagcaaaagg 5057328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 198 - 244
Target Start/End: Original strand, 16351178 - 16351224
Alignment:
Q  198 tgttttatgtaatgcgaaagtatcgctcaagttgaagggaaaatttt 244  Q
    |||||||||| ||| ||||||| ||||||||||||||||||| ||||    
T  16351178 tgttttatgtgatgtgaaagtaacgctcaagttgaagggaaattttt 16351224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 246
Target Start/End: Original strand, 25985324 - 25985377
Alignment:
Q  193 tcaaatgttttatgtaatgcgaaagtatcgctcaagttgaagggaaaattttat 246  Q
    |||| |||||||| | ||||| ||||| |||||||||| |||||||||||||||    
T  25985324 tcaagtgttttatatgatgcggaagtaccgctcaagttaaagggaaaattttat 25985377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 226 - 323
Target Start/End: Complemental strand, 38328272 - 38328175
Alignment:
Q  226 aagttgaagggaaaattttattggacaacggtaagactaaaaatgttgcatgagacaaagtgttggatggtaaagaaccaacacaaatataaattaag 323  Q
    ||||||||||||||| ||||| | ||||| ||||||| || |||| || | |||| | || |||||   |||||||||||||||||| ||||| ||||    
T  38328272 aagttgaagggaaaaatttatcgaacaacagtaagaccaacaatggtgtacgagatagagagttgggcagtaaagaaccaacacaaacataaagtaag 38328175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 198 - 308
Target Start/End: Original strand, 7292777 - 7292887
Alignment:
Q  198 tgttttatgtaatgcgaaagtatcgctcaagttgaagggaaaattttattggacaacggtaagactaaaaatgttgcatgagacaaagtgttggatggta 297  Q
    |||||||| | |||||||||||  ||||||||||||| |||||||| ||  ||||||||||||||  | ||||||| | | ||||| ||||||| ||||     
T  7292777 tgttttatatgatgcgaaagtactgctcaagttgaagagaaaatttcatatgacaacggtaagaccgacaatgttgtacgggacaaggtgttgggtggtg 7292876  T
Q  298 aagaaccaaca 308  Q
    |||||||||||    
T  7292877 aagaaccaaca 7292887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 156
Target Start/End: Original strand, 876735 - 876841
Alignment:
Q  50 tatggaatgcaattttagcaaaaggtgaattgtttctagtatagaggtgaaagtttgttatcatatcttatcacaagttacacgatttaaatatcttgaa 149  Q
    ||||||||| ||||||||| | ||| |||  ||| |||| ||||||||||||||| |  |||||||| || ||||||||||||  ||||||||| ||| |    
T  876735 tatggaatgtaattttagccagaggagaagcgttcctagcatagaggtgaaagttggagatcatatcctaccacaagttacacagtttaaatatgttgga 876834  T
Q  150 tttatag 156  Q
    | |||||    
T  876835 tctatag 876841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 143
Target Start/End: Original strand, 12904568 - 12904664
Alignment:
Q  46 agtatatggaatgcaattttagcaaaaggtgaattgtttctagtatagaggtgaaagtttgttatcatatcttatcacaagttacacgatttaaatat 143  Q
    ||||||| ||||| ||||| ||||||||| |||  ||||||||| |||||||  || || |  |||||||| |||||||||||||||| |||||||||    
T  12904568 agtatatagaatgtaattt-agcaaaaggcgaaacgtttctagtttagaggtacaaattggagatcatatcatatcacaagttacacggtttaaatat 12904664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 87
Target Start/End: Original strand, 14769880 - 14769939
Alignment:
Q  28 tgaatagaagcaaaccatagtatatggaatgcaattttagcaaaaggtgaattgtttcta 87  Q
    |||||||||||||  || ||||||||||||| ||||||||| ||||| ||||| ||||||    
T  14769880 tgaatagaagcaagacagagtatatggaatgtaattttagctaaaggcgaattatttcta 14769939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 93 - 147
Target Start/End: Complemental strand, 38453256 - 38453202
Alignment:
Q  93 gaggtgaaagtttgttatcatatcttatcacaagttacacgatttaaatatcttg 147  Q
    |||||||||||| |  |||||||| || | |||||||||||||||||||||||||    
T  38453256 gaggtgaaagttggagatcatatcataccccaagttacacgatttaaatatcttg 38453202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 180
Target Start/End: Complemental strand, 11992744 - 11992655
Alignment:
Q  91 tagaggtgaaagtttgttatcatatcttatcacaagttacacgatttaaatatcttgaatttatagcataaaacgaaggagaaattgaag 180  Q
    |||||||||||||| |  |||||||| || | ||||||||||| |||||||||||||  | ||||| | |||| || |||||||| ||||    
T  11992744 tagaggtgaaagttggagatcatatcataccccaagttacacggtttaaatatcttgggtctatagtacaaaatgatggagaaatagaag 11992655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 147
Target Start/End: Complemental strand, 24584289 - 24584188
Alignment:
Q  46 agtatatggaatgcaattttagcaaaaggtgaattgtttctagtatagaggtgaaagtttgttatcatatcttatcacaagttacacgatttaaatatct 145  Q
    ||||||||||||| || || ||||||||| ||||| | ||||   | |||||||||||| |  ||||||||  | | ||||||||||| |||||||||||    
T  24584289 agtatatggaatgtaacttcagcaaaaggagaattatgtctaccttggaggtgaaagttggagatcatatcagaccgcaagttacacggtttaaatatct 24584190  T
Q  146 tg 147  Q
    ||    
T  24584189 tg 24584188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 499 - 624
Target Start/End: Original strand, 40446912 - 40447036
Alignment:
Q  499 gttacacattgaaattacattctcccatcaatataattagccaaatcaagaaaacaaactccctccatctccatatggtcacacgcaaactatcccccta 598  Q
    ||||||||||||||| |  |||| ||| ||||||||||||||||| | ||||  |||||||| |||  ||||| | | ||| ||||||| | |  ||||     
T  40446912 gttacacattgaaatcagtttcttccaccaatataattagccaaacctagaaggcaaactccatccccctccaaaggatcatacgcaaattgt-tccctc 40447010  T
Q  599 tcacaatattctcttattatttccta 624  Q
    ||||| ||||||||||||| ||||||    
T  40447011 tcacagtattctcttattacttccta 40447036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 94 - 194
Target Start/End: Original strand, 7921574 - 7921675
Alignment:
Q  94 aggtgaaagtttgttatcatatcttatcacaagttacacgatttaaatatcttgaatttatagcataaaacgaaggagaaattgaaggag-tgtaaacca 192  Q
    ||||||||||| |  ||||||||||| |||||||||||||||||| |||||||| ||  |||| | |||||||  ||||||| ||||||| |||||||||    
T  7921574 aggtgaaagttggagatcatatcttaccacaagttacacgatttatatatcttggatccatagtacaaaacgattgagaaatagaaggagatgtaaacca 7921673  T
Q  193 tc 194  Q
    ||    
T  7921674 tc 7921675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 474 - 620
Target Start/End: Complemental strand, 37667947 - 37667798
Alignment:
Q  474 ttccatgaattcataagttgagtctgttacacattgaaattacattctcccatcaatataattagccaaatcaagaaaacaaactccctccatctccata 573  Q
    |||| ||||||||| ||||  ||| |||||||||| |||| ||  |||  |||||||| ||||| |||||||||||||||||||||||||| | ||||||    
T  37667947 ttccttgaattcattagtttggtcagttacacattaaaatcactctcttacatcaatacaattatccaaatcaagaaaacaaactccctcc-tatccata 37667849  T
Q  574 tggtcacacgcaaactatc----cccctatcacaatattctcttattattt 620  Q
    ||  | ||||||||| |||    ||| ||||||||| ||||| ||||||||    
T  37667848 tgacctcacgcaaaccatcatatcccttatcacaatgttctcctattattt 37667798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 43 - 147
Target Start/End: Original strand, 40419277 - 40419381
Alignment:
Q  43 catagtatatggaatgcaattttagcaaaaggtgaattgtttctagtatagaggtgaaagtttgttatcatatcttatcacaagttacacgatttaaata 142  Q
    |||||||||||||||| |||||||||||||||  ||   |||||||  || ||||||||||| |  |||||||| || ||||||||||||  ||||||||    
T  40419277 catagtatatggaatgtaattttagcaaaaggcaaagcatttctagcgtaaaggtgaaagttggagatcatatcataccacaagttacacagtttaaata 40419376  T
Q  143 tcttg 147  Q
    |||||    
T  40419377 tcttg 40419381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 81 - 193
Target Start/End: Original strand, 6640760 - 6640873
Alignment:
Q  81 gtttctagtatagaggtgaaagtttgttatcatatcttatcacaagttacacgatttaaatatcttgaatttatagcataaaacgaaggagaaattgaag 180  Q
    ||||||||| |||||||||||||| |  |||||||   | ||||||||||||| |||||||||||||| | ||||| | ||||  | |||||||| ||||    
T  6640760 gtttctagtgtagaggtgaaagttagagatcatattacaccacaagttacacggtttaaatatcttgagtctatagtacaaaattatggagaaatagaag 6640859  T
Q  181 ga-gtgtaaaccat 193  Q
    || |||||||||||    
T  6640860 gaggtgtaaaccat 6640873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 474 - 564
Target Start/End: Complemental strand, 43408556 - 43408466
Alignment:
Q  474 ttccatgaattcataagttgagtctgttacacattgaaattacattctcccatcaatataattagccaaatcaagaaaacaaactccctcc 564  Q
    |||| ||||||||| ||||  ||| |||||||||| |||| ||  |||  |||||||| ||||| ||||||||||||||| ||||||||||    
T  43408556 ttccttgaattcattagtttggtcagttacacattaaaatcactctcttacatcaatacaattatccaaatcaagaaaaccaactccctcc 43408466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 499 - 624
Target Start/End: Original strand, 337539 - 337663
Alignment:
Q  499 gttacacattgaaattacattctcccatcaatataattagccaaatcaagaaaacaaactccctccatctccatatggtcacacgcaaactatcccccta 598  Q
    ||||||||||||||| |  |||| ||| ||||||||||||||||| | ||||  |||||||| |||  ||||| | | ||| ||||||| |||  ||||     
T  337539 gttacacattgaaatcagtttcttccaccaatataattagccaaacctagaaggcaaactccatccccctccaaaggatcatacgcaaattat-tccctc 337637  T
Q  599 tcacaatattctcttattatttccta 624  Q
    ||||| ||||||||||||| ||||||    
T  337638 tcacagtattctcttattacttccta 337663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 198 - 314
Target Start/End: Original strand, 6640918 - 6641035
Alignment:
Q  198 tgttttatgtaatgcgaaagtatcgctcaagttgaagggaaa-attttattggacaacggtaagactaaaaatgttgcatgagacaaagtgttggatggt 296  Q
    |||||||||| || |||||||| |||| ||||||||||||||  |||||| ||||||| ||||| |  |  |||||| | ||| |||||||||||| | |    
T  6640918 tgttttatgtgatccgaaagtaccgcttaagttgaagggaaattttttatcggacaactgtaagtccgacgatgttgtacgaggcaaagtgttggacgat 6641017  T
Q  297 aaagaaccaacacaaata 314  Q
     |||||||||||| ||||    
T  6641018 gaagaaccaacacgaata 6641035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 147
Target Start/End: Original strand, 28528166 - 28528281
Alignment:
Q  32 tagaagcaaaccatagtatatggaatgcaattttagcaaaaggtgaattgtttctagtatagaggtgaaagtttgttatcatatcttatcacaagttaca 131  Q
    |||||||||  || ||||||||| ||  | ||||||||| ||| |||  ||||||||  |||||||||||||| |  |||||| | || |||||||||||    
T  28528166 tagaagcaagacaaagtatatgggatatagttttagcaagaggcgaagcgtttctagcctagaggtgaaagttggagatcatagcataccacaagttaca 28528265  T
Q  132 cgatttaaatatcttg 147  Q
    |  |||||||||||||    
T  28528266 cagtttaaatatcttg 28528281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 222 - 312
Target Start/End: Original strand, 7921740 - 7921830
Alignment:
Q  222 gctcaagttgaagggaaaattttattggacaacggtaagactaaaaatgttgcatgagacaaagtgttggatggtaaagaaccaacacaaa 312  Q
    |||||||||||||||||||||||  || ||| |  ||||||  | ||||||| |||  |||||||||||| | |||||||||| |||||||    
T  7921740 gctcaagttgaagggaaaattttcctgaacatctataagaccgacaatgttgtatggtacaaagtgttgggttgtaaagaaccgacacaaa 7921830  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 24 - 78
Target Start/End: Complemental strand, 32066973 - 32066919
Alignment:
Q  24 catatgaatagaagcaaaccatagtatatggaatgcaattttagcaaaaggtgaa 78  Q
    ||||||| ||||||||   ||||||||||| |||| |||||||||||||||||||    
T  32066973 catatgagtagaagcatgacatagtatatgtaatgtaattttagcaaaaggtgaa 32066919  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 221 - 262
Target Start/End: Complemental strand, 12262151 - 12262110
Alignment:
Q  221 cgctcaagttgaagggaaaattttattggacaacggtaagac 262  Q
    |||| |||||||||||||||||||||| ||||| ||||||||    
T  12262151 cgcttaagttgaagggaaaattttatttgacaatggtaagac 12262110  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 226 - 311
Target Start/End: Complemental strand, 37463332 - 37463247
Alignment:
Q  226 aagttgaagggaaaattttattggacaacggtaagactaaaaatgttgcatgagacaaagtgttggatggtaaagaaccaacacaa 311  Q
    |||||||| |||||||| |||  |||||| || ||||||  ||||||| |||  ||| |||||||| |||| ||||||||||||||    
T  37463332 aagttgaaaggaaaattctatcagacaacagtcagactagcaatgttgtatggtacagagtgttgggtggttaagaaccaacacaa 37463247  T

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Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 261
Target Start/End: Original strand, 43423540 - 43423589
Alignment:
Q  212 cgaaagtatcgctcaagttgaagggaaaattttattggacaacggtaaga 261  Q
    |||||||||  ||||||||||||| ||| |||||||||||||| ||||||    
T  43423540 cgaaagtatgactcaagttgaaggaaaagttttattggacaactgtaaga 43423589  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000007; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 32 - 147
Target Start/End: Complemental strand, 43793737 - 43793622
Alignment:
Q  32 tagaagcaaaccatagtatatggaatgcaattttagcaaaaggtgaattgtttctagtatagaggtgaaagtttgttatcatatcttatcacaagttaca 131  Q
    |||||||||  || |||||| |||||| || |||||||| ||| |||  ||||| ||| |||||||||||||| |  |||||||| || ||| |||||||    
T  43793737 tagaagcaagacagagtatacggaatgtaaatttagcaagaggcgaagcgtttcgagtgtagaggtgaaagttagagatcatatcataccactagttaca 43793638  T
Q  132 cgatttaaatatcttg 147  Q
    |  |||||||||||||    
T  43793637 cattttaaatatcttg 43793622  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 499 - 624
Target Start/End: Original strand, 22077134 - 22077258
Alignment:
Q  499 gttacacattgaaattacattctcccatcaatataattagccaaatcaagaaaacaaactccctccatctccatatggtcacacgcaaactatcccccta 598  Q
    ||||||||||||||| |  |||| ||| ||||||||||||||||| | ||||  |||||||| |||  ||||| |||  || ||||||| | |  ||||     
T  22077134 gttacacattgaaatcagtttcttccaccaatataattagccaaacctagaaggcaaactccatccccctccaaatgaccatacgcaaattgt-tccctc 22077232  T
Q  599 tcacaatattctcttattatttccta 624  Q
    ||||||||||||||||||| ||||||    
T  22077233 tcacaatattctcttattacttccta 22077258  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 147
Target Start/End: Original strand, 38606605 - 38606705
Alignment:
Q  46 agtatatggaatgcaattttagcaaaaggtgaattgtttctagtatagaggtgaaagtttgttatcatatcttatcacaagttacacgatttaaatatct 145  Q
    ||||||||||||| |||||| |||||||| ||| ||  ||||   | |||||||||||| |  |||||||| |||| ||||||||||| |||||||||||    
T  38606605 agtatatggaatgtaatttttgcaaaaggagaagtgggtctacctt-gaggtgaaagttggagatcatatcatatcccaagttacacggtttaaatatct 38606703  T
Q  146 tg 147  Q
    ||    
T  38606704 tg 38606705  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 226 - 314
Target Start/End: Complemental strand, 24425986 - 24425898
Alignment:
Q  226 aagttgaagggaaaattttattggacaacggtaagactaaaaatgttgcatgagacaaagtgttggatggtaaagaaccaacacaaata 314  Q
    ||||||||||||||||| ||||||||||| || ||||  |  |||||| |||| ||||| |||||  |||| || ||||||||||||||    
T  24425986 aagttgaagggaaaattctattggacaactgttagaccgatgatgttgtatgaaacaaaatgttgagtggttaataaccaacacaaata 24425898  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 309
Target Start/End: Original strand, 47235557 - 47235652
Alignment:
Q  214 aaagtatcgctcaagttgaagggaaaattttattggacaacggtaagactaaaaatgttgcatgagacaaagtgttggatggtaaagaaccaacac 309  Q
    |||||| |||| |||||||||| |||||||||||||||||   | ||||| | |||| || |||||||  |||||||   ||||||||||||||||    
T  47235557 aaagtaccgcttaagttgaaggtaaaattttattggacaattatcagactgacaatgctgtatgagacggagtgttgagcggtaaagaaccaacac 47235652  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 147
Target Start/End: Original strand, 32630206 - 32630307
Alignment:
Q  46 agtatatggaatgcaattttagcaaaaggtgaattgtttctagtatagaggtgaaagtttgttatcatatcttatcacaagttacacgatttaaatatct 145  Q
    ||||||||||||| || || ||||||||| ||| ||  ||||   | |||||||||||| |  |||||||| || | ||||||||||| |||||||||||    
T  32630206 agtatatggaatgtaacttcagcaaaaggagaagtgggtctaccttggaggtgaaagttggagatcatatcataccccaagttacacggtttaaatatct 32630305  T
Q  146 tg 147  Q
    ||    
T  32630306 tg 32630307  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 266 - 323
Target Start/End: Complemental strand, 42177440 - 42177383
Alignment:
Q  266 aaatgttgcatgagacaaagtgttggatggtaaagaaccaacacaaatataaattaag 323  Q
    |||||||| ||| ||||||||||||||  |||||| |||||||| || ||||||||||    
T  42177440 aaatgttgtatgggacaaagtgttggactgtaaaggaccaacacgaaaataaattaag 42177383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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