View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18643_low_21 (Length: 278)

Name: NF18643_low_21
Description: NF18643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18643_low_21
NF18643_low_21
[»] chr2 (4 HSPs)
chr2 (1-138)||(45338515-45338652)
chr2 (1-138)||(45336203-45336340)
chr2 (17-91)||(14662318-14662392)
chr2 (27-141)||(17648808-17648923)
[»] chr5 (2 HSPs)
chr5 (1-139)||(32797949-32798087)
chr5 (1-138)||(32800262-32800399)
[»] chr8 (3 HSPs)
chr8 (1-137)||(44731786-44731922)
chr8 (1-138)||(44734096-44734233)
chr8 (139-264)||(10044143-10044268)
[»] chr1 (2 HSPs)
chr1 (1-138)||(1550100-1550237)
chr1 (1-138)||(9535199-9535336)
[»] chr3 (7 HSPs)
chr3 (1-138)||(28784457-28784594)
chr3 (1-139)||(48707758-48707902)
chr3 (17-138)||(48025194-48025316)
chr3 (17-91)||(48024083-48024157)
chr3 (17-91)||(48024634-48024708)
chr3 (17-91)||(48027374-48027448)
chr3 (76-138)||(5907718-5907781)
[»] chr4 (3 HSPs)
chr4 (1-139)||(22804552-22804692)
chr4 (17-91)||(7231046-7231118)
chr4 (76-138)||(44640115-44640179)
[»] chr6 (1 HSPs)
chr6 (17-96)||(6723446-6723525)
[»] chr7 (2 HSPs)
chr7 (17-97)||(13108906-13108986)
chr7 (17-138)||(13111199-13111321)


Alignment Details
Target: chr2 (Bit Score: 130; Significance: 2e-67; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 45338652 - 45338515
Alignment:
Q  1 tcatcacctaggactcttacttaccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaatcatgacagaaaataacaacac 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  45338652 tcattacctaggactcttacttaccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaaataacaacac 45338553  T
Q  101 aattaattattaaatcagaaaaatatcaatctccaaca 138  Q
    ||||||||||||||||||||||||||||||||||||||    
T  45338552 aattaattattaaatcagaaaaatatcaatctccaaca 45338515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 45336340 - 45336203
Alignment:
Q  1 tcatcacctaggactcttacttaccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaatcatgacagaaaataacaacac 100  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  45336340 tcattacctaggactcttacttaccaaataagcaacaatctaaatatgacacttaaacttacacaagcaacacattaattatgacagaaaataacaacac 45336241  T
Q  101 aattaattattaaatcagaaaaatatcaatctccaaca 138  Q
    ||||||||||||||||||||||||||||||||||||||    
T  45336240 aattaattattaaatcagaaaaatatcaatctccaaca 45336203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 14662392 - 14662318
Alignment:
Q  17 ttacttaccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaatcatgacagaaaa 91  Q
    |||||||| ||||||||||| |||||| ||||||||||| || |||||||||||||| ||||| |||||||||||    
T  14662392 ttacttactaaataagcaacgatctaattatgacacttatacataaacaagcaacactttaattatgacagaaaa 14662318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 27 - 141
Target Start/End: Complemental strand, 17648923 - 17648808
Alignment:
Q  27 aataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaatcatgacag-aaaataaca--acacaattaattattaaatcagaaaaa 123  Q
    ||||||||||||||||| |||||||  | |||||||||||||||||   |||| ||||||| |||| | ||  |||||| ||||||  ||| ||||||||    
T  17648923 aataagcaacaatctaattatgaca--ttaacttaaacaagcaacaagctaattatgacagaaaaacagcagcacacaagtaattaacaaaacagaaaaa 17648826  T
Q  124 tatcaatctccaacaatt 141  Q
    ||||||||||||||||||    
T  17648825 tatcaatctccaacaatt 17648808  T

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Target: chr5 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 32798087 - 32797949
Alignment:
Q  1 tcatcacctaggactcttacttaccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaatcatgacagaaaataacaacac 100  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  32798087 tcattacctaggactcttacttaccaaataagcaacaatctaattatgacacttaaacttaaacaagcaacacattaattatgacagaaaataacaacac 32797988  T
Q  101 aattaattattaaatcagaaaaatatcaatctccaacaa 139  Q
    |||||||||||||||||||||||||||||||||||||||    
T  32797987 aattaattattaaatcagaaaaatatcaatctccaacaa 32797949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 32800399 - 32800262
Alignment:
Q  1 tcatcacctaggactcttacttaccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaatcatgacagaaaataacaacac 100  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  32800399 tcattacctaggactcttacttaccaaataagcaacaatctaattatgacacttaaacttaaacaagcaacacattaattatgacagaaaataacaacac 32800300  T
Q  101 aattaattattaaatcagaaaaatatcaatctccaaca 138  Q
    ||||||||||||||||||||||||||||||||||||||    
T  32800299 aattaattattaaatcagaaaaatatcaatctccaaca 32800262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 125; Significance: 2e-64; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 44731922 - 44731786
Alignment:
Q  1 tcatcacctaggactcttacttaccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaatcatgacagaaaataacaacac 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  44731922 tcattacctaggactcttacttaccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaaataacaacac 44731823  T
Q  101 aattaattattaaatcagaaaaatatcaatctccaac 137  Q
    |||||||| ||||||||||||||||||||||||||||    
T  44731822 aattaatttttaaatcagaaaaatatcaatctccaac 44731786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 44734233 - 44734096
Alignment:
Q  1 tcatcacctaggactcttacttaccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaatcatgacagaaaataacaacac 100  Q
    |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  44734233 tcattacctaggactcttacttaccaaataagcaacaacctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaaataacaacac 44734134  T
Q  101 aattaattattaaatcagaaaaatatcaatctccaaca 138  Q
    |||||||| |||||||||||||||||||||||||||||    
T  44734133 aattaatttttaaatcagaaaaatatcaatctccaaca 44734096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 139 - 264
Target Start/End: Original strand, 10044143 - 10044268
Alignment:
Q  139 attatgaaagccagcagaagaaaaactgagaaagaaacacaaactgaaaagaattccaagtaacaaggccccacgcaaaataatctccttcatcgtaaca 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  10044143 attatgaaagccagcagaagaaaaactgagaaagaaacacaaactgaaaagaattccaagtaacaaggccccacgcaaaataatctccttcatcataaca 10044242  T
Q  239 agattagatgtggatttcgctgcaac 264  Q
     |||||||||||| ||||||||||||    
T  10044243 ggattagatgtggttttcgctgcaac 10044268  T

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Target: chr1 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 1550237 - 1550100
Alignment:
Q  1 tcatcacctaggactcttacttaccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaatcatgacagaaaataacaacac 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||    
T  1550237 tcattacctaggactcttacttaccaaataagcaacaatctaactatgacacttaaacttatacaagcaacacattaattatgacataaaataacaacac 1550138  T
Q  101 aattaattattaaatcagaaaaatatcaatctccaaca 138  Q
    ||||||||||||||||||||||||||||||||||||||    
T  1550137 aattaattattaaatcagaaaaatatcaatctccaaca 1550100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 9535336 - 9535199
Alignment:
Q  1 tcatcacctaggactcttacttaccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaatcatgacagaaaataacaacac 100  Q
    |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  9535336 tcattacctaggactcttacttaccaaataagcaacaatctaattatgacacttaaacttaaacaagcaacacattaattttgacagaaaataacaacac 9535237  T
Q  101 aattaattattaaatcagaaaaatatcaatctccaaca 138  Q
    |||||||||||||| |||||||||||||||||||||||    
T  9535236 aattaattattaaaccagaaaaatatcaatctccaaca 9535199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 118; Significance: 3e-60; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 28784594 - 28784457
Alignment:
Q  1 tcatcacctaggactcttacttaccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaatcatgacagaaaataacaacac 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||    
T  28784594 tcattacctaggactcttacttaccaaataagcaacaatctaactataacacttaaacttaaacaagcaacacattaattatgagagaaaataacaacac 28784495  T
Q  101 aattaattattaaatcagaaaaatatcaatctccaaca 138  Q
    |||||||| |||||||||||||||||||||||||||||    
T  28784494 aattaatttttaaatcagaaaaatatcaatctccaaca 28784457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 48707758 - 48707902
Alignment:
Q  1 tcatcacctaggactcttacttaccaaataagcaacaatctaactatgacactt------aaacttaaacaagcaacacattaatcatgacagaaaataa 94  Q
    |||| |||||||||||||||||||||||||| ||||||||||||||||||||||      ||||||||||||||||||||||||| ||||||||||||||    
T  48707758 tcattacctaggactcttacttaccaaataaacaacaatctaactatgacacttaaacttaaacttaaacaagcaacacattaattatgacagaaaataa 48707857  T
Q  95 caacacaattaattattaaatcagaaaaatatcaatctccaacaa 139  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  48707858 caacacaattaattattaaatcagaaaaatatcaatctccaacaa 48707902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 138
Target Start/End: Original strand, 48025194 - 48025316
Alignment:
Q  17 ttacttaccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaatcatgacagaaaataacaaca-caattaattattaaat 115  Q
    |||||||| |||||||||||||||||| ||||||| ||| || |||||||||||||| ||||| ||||||||||| | ||  |  || ||||||  |||     
T  48025194 ttacttactaaataagcaacaatctaattatgacatttatacataaacaagcaacactttaattatgacagaaaacagcagtagaaaataattaacaaaa 48025293  T
Q  116 cagaaaaatatcaatctccaaca 138  Q
    |||||||||||||||||||||||    
T  48025294 cagaaaaatatcaatctccaaca 48025316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 17 - 91
Target Start/End: Original strand, 48024083 - 48024157
Alignment:
Q  17 ttacttaccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaatcatgacagaaaa 91  Q
    |||||||| |||||||||||||||||| ||||||||||| || |||||||| ||||| ||||| |||||||||||    
T  48024083 ttacttactaaataagcaacaatctaattatgacacttatacataaacaagtaacactttaattatgacagaaaa 48024157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 91
Target Start/End: Original strand, 48024634 - 48024708
Alignment:
Q  17 ttacttaccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaatcatgacagaaaa 91  Q
    |||||||| |||||||||||||||||| ||||||||||| || |||||| ||||||  ||||| |||||||||||    
T  48024634 ttacttactaaataagcaacaatctaattatgacacttatacataaacatgcaacattttaattatgacagaaaa 48024708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 91
Target Start/End: Original strand, 48027374 - 48027448
Alignment:
Q  17 ttacttaccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaatcatgacagaaaa 91  Q
    |||||||| |||||||||||||||||| ||||||||||| || |||||||||||||| | ||| ||| |||||||    
T  48027374 ttacttactaaataagcaacaatctaattatgacacttatacataaacaagcaacacttaaattatggcagaaaa 48027448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 76 - 138
Target Start/End: Complemental strand, 5907781 - 5907718
Alignment:
Q  76 taatcatgacagaaaataacaa-cacaattaattattaaatcagaaaaatatcaatctccaaca 138  Q
    |||| |||||||||||| |||| ||||| ||||||||||| |||||||||||||||||||||||    
T  5907781 taattatgacagaaaattacaaacacaagtaattattaaaccagaaaaatatcaatctccaaca 5907718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 98; Significance: 3e-48; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 22804692 - 22804552
Alignment:
Q  1 tcatcacctaggactctt--acttaccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaatcatgacagaaaataacaac 98  Q
    |||| |||||||||||||  |||||||||||||||| |||||||| |||| |||||||||||||||||||||| ||||||| |||| |||||||||||||    
T  22804692 tcattacctaggactcttttacttaccaaataagcagcaatctaattatggcacttaaacttaaacaagcaacgcattaattatgagagaaaataacaac 22804593  T
Q  99 acaattaattattaaatcagaaaaatatcaatctccaacaa 139  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  22804592 acaattaattattaaaccagaaaaatatcaatctccaacaa 22804552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 91
Target Start/End: Original strand, 7231046 - 7231118
Alignment:
Q  17 ttacttaccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaatcatgacagaaaa 91  Q
    |||||||| ||||||||| |||||||| |||||||||  |||||||||||||||||   |||| |||||||||||    
T  7231046 ttacttactaaataagcagcaatctaattatgacact--aacttaaacaagcaacaatctaattatgacagaaaa 7231118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 138
Target Start/End: Complemental strand, 44640179 - 44640115
Alignment:
Q  76 taatcatgacagaaaat-aacaacacaattaatt-attaaatcagaaaaatatcaatctccaaca 138  Q
    |||| |||||||||||  |||||||||| | ||| |||||| |||||||||||||||||||||||    
T  44640179 taattatgacagaaaaacaacaacacaaatcatttattaaaccagaaaaatatcaatctccaaca 44640115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 17 - 96
Target Start/End: Complemental strand, 6723525 - 6723446
Alignment:
Q  17 ttacttaccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaatcatgacagaaaataaca 96  Q
    |||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||| ||||| ||||||||||| ||||    
T  6723525 ttacttactaaataagcaacaatctaattatgacacttacacttaaacaagcaacactttaattatgacagaaaacaaca 6723446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 97
Target Start/End: Original strand, 13108906 - 13108986
Alignment:
Q  17 ttacttaccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaatcatgacagaaaataacaa 97  Q
    |||||||| |||||||||||||||||| ||||||||||| |  |||||||||||||| ||||| ||||||||||| |||||    
T  13108906 ttacttactaaataagcaacaatctaattatgacacttataaataaacaagcaacactttaattatgacagaaaacaacaa 13108986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 17 - 138
Target Start/End: Original strand, 13111199 - 13111321
Alignment:
Q  17 ttacttaccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaatcatgacagaaaataaca-acacaattaattattaaat 115  Q
    |||||||| |||||||||||||||||| |||| |||||  || |||||||||||||| ||||| ||||||||||| | ||   | || ||||||  |||     
T  13111199 ttacttactaaataagcaacaatctaattatggcacttctacataaacaagcaacactttaattatgacagaaaacagcagtaaaaagtaattaacaaaa 13111298  T
Q  116 cagaaaaatatcaatctccaaca 138  Q
    |||||||||||||||||||||||    
T  13111299 cagaaaaatatcaatctccaaca 13111321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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