View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18643_low_22 (Length: 272)
Name: NF18643_low_22
Description: NF18643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18643_low_22 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 7820220 - 7820482
Alignment:
| Q |
1 |
ataagagcaaaactccttgtcccatcccatgttctt------gaacttcttgacattggaaacaatctcaaaagtcgtaaactaaaatttagaacagaga |
94 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7820220 |
ataagagcaaaactccttgtcccatcccatgttcttgatcttgaacttcttgacattggaaacaatctcaaaagtcgtaaactaaaatttagaacagaga |
7820319 |
T |
|
| Q |
95 |
atataaaaataatcattcaaaattcttggttgaaaaaagattgggtggtatccaacgatttatcccatgaagtac-caatgagtgttccaacttccttga |
193 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
7820320 |
atataaaaataatcattcaaaattcttggttgaaaaaagattgggtggtatccaacgatttatcccatgaagtacgcaatgagtgttccaacttccttga |
7820419 |
T |
|
| Q |
194 |
gtctgaagaagaatataacaattcatattttagattctcccgtggagttagaaaacttgatta |
256 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7820420 |
gtctgaagaagaatataacaattcatattttagattctcccgtggagttagaaaacttgatta |
7820482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 120 - 255
Target Start/End: Original strand, 7862907 - 7863045
Alignment:
| Q |
120 |
ttggttgaaaaa-agattgggtggtatccaacgatttatcccatgaagtaccaatgagtgttccaacttccttgagtctgaagaagaatataacaattca |
218 |
Q |
| |
|
|||||||||||| |||||||||||| |||| | |||| ||||||||||||||| ||| ||| ||||||||||||||| ||||||||||| || |||||| |
|
|
| T |
7862907 |
ttggttgaaaaagagattgggtggtttccatcaatttctcccatgaagtacca-tgaatgtgccaacttccttgagtttgaagaagaatctaggaattca |
7863005 |
T |
|
| Q |
219 |
tattttagattctccc---gtggagttagaaaacttgatt |
255 |
Q |
| |
|
| |||||||||||||| || ||||||| |||||||||| |
|
|
| T |
7863006 |
tgttttagattctccctctgtagagttagtaaacttgatt |
7863045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 63 - 256
Target Start/End: Complemental strand, 7869438 - 7869238
Alignment:
| Q |
63 |
caaaagtcgtaaactaaaatttagaacagagaatataaaaataatcattcaaaattc----ttggttgaaaaaagattgggtggtatccaacgatttatc |
158 |
Q |
| |
|
|||||||| || ||||||||||| |||| |||| ||||||| || |||||||||||| |||| ||||||||| ||||| ||| |||| | ||| | |
|
|
| T |
7869438 |
caaaagtcatagactaaaatttaaaacaaagaagataaaaaaaaccattcaaaattctttgttgggtgaaaaaaggttgggaggtttccatcactttctg |
7869339 |
T |
|
| Q |
159 |
ccatgaagtaccaatgagtgttccaacttccttgagtctgaagaagaatataacaattcatattttagattctccc---gtggagttagaaaacttgatt |
255 |
Q |
| |
|
|||| ||||| ||||| ||| |||| |||||||| | |||||||| || ||||||||||||||||| || ||| ||||||||||||||||| |
|
|
| T |
7869338 |
ccatcaagtatcaatggatgtgccaatttccttgatccgaaagaagaaactagggtttcatattttagattcttcccttgtgtagttagaaaacttgatt |
7869239 |
T |
|
| Q |
256 |
a |
256 |
Q |
| |
|
| |
|
|
| T |
7869238 |
a |
7869238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 256
Target Start/End: Original strand, 7817130 - 7817189
Alignment:
| Q |
199 |
aagaagaatataacaattcatattttagattctccc--gtggagttagaaaacttgatta |
256 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
7817130 |
aagaagaatataggaattcatgttttagattctcccctttggagttagaaaacttgatta |
7817189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University