View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18643_low_24 (Length: 250)
Name: NF18643_low_24
Description: NF18643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18643_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 15559550 - 15559786
Alignment:
| Q |
1 |
ataatactatattcttttttctttataatatttgattgtgatcaaaatacattgatcaatggtttatcgcgcgggtcaacgatctagtaccaaacacaag |
100 |
Q |
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| T |
15559550 |
ataatactatattcttttttctttataatatttgattgtaatcaaaatacattgatcaatggtttatcgcgccggtcaacgatctagtaccaaacacaag |
15559649 |
T |
|
| Q |
101 |
caacagatttgagcacagaacataacaatcacaaatgctagctgctcgttaggacaggtgccaggctttgcctccattcatattgaatttcttgtgcctc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||| ||||| ||||| |
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| T |
15559650 |
caacagatttgagcacagaacataacaatcacaaatgctatctgctccttaggacaggtgccaggctttgcctcctttcatattgaatctcttgagcctc |
15559749 |
T |
|
| Q |
201 |
ccaaagaacataaccaatataaggatacacttcccct |
237 |
Q |
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| T |
15559750 |
ccaaagaacataaccaatataaggatacacttcccct |
15559786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 88 - 237
Target Start/End: Complemental strand, 15560298 - 15560149
Alignment:
| Q |
88 |
taccaaacacaagcaacagatttgagcacagaacataacaatcacaaatgctagctgctcgttaggacaggtgccaggctttgcctccattcatattgaa |
187 |
Q |
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| T |
15560298 |
taccaaatacaggcaacagctttgagcacagaacataacaatcacaaatgctagctgctcgttaggacaggtgccaggctttgcctcctttcatattgaa |
15560199 |
T |
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| Q |
188 |
tttcttgtgcctcccaaagaacataaccaatataaggatacacttcccct |
237 |
Q |
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| T |
15560198 |
tctcttgagcctaccaaagaacataaccaatataaggatacacttcccct |
15560149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 150 - 235
Target Start/End: Original strand, 34988865 - 34988950
Alignment:
| Q |
150 |
taggacaggtgccaggctttgcctccattcatattgaatttcttgtgcctcccaaagaacataaccaatataaggatacacttccc |
235 |
Q |
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| T |
34988865 |
taggacaagttccatgctttgccaccattcatattgaatttcttgagcatcccaaagaacattaccaaaataaggataaacttccc |
34988950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 150 - 223
Target Start/End: Original strand, 35042427 - 35042500
Alignment:
| Q |
150 |
taggacaggtgccaggctttgcctccattcatattgaatttcttgtgcctcccaaagaacataaccaatataag |
223 |
Q |
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| T |
35042427 |
taggacaggtgccatgccttgccaccattcatattgaatttcttgagtctcccaaagaacattaccaagataag |
35042500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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