View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18643_low_25 (Length: 250)
Name: NF18643_low_25
Description: NF18643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18643_low_25 |
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| [»] chr6 (1 HSPs) |
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| [»] chr7 (2 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 125; Significance: 2e-64; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 49 - 247
Target Start/End: Complemental strand, 13203392 - 13203203
Alignment:
| Q |
49 |
tattagcgaaaacatcaagactatcttgtagctctttggcatgtgattgtagcatgacatcgtatcccaacatctatgctttgtgctagataagatcgaa |
148 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |||||||||||||||| | ||||||||||| |
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| T |
13203392 |
tattagcgaaaacatcaagactatcttgtagctttttggcatgtgattgtagcatgacatcg-atcccagcatctatgctttgtgccaaataagatcgaa |
13203294 |
T |
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| Q |
149 |
cggtggcagtaaatttgggataaactcgtgaaatcatgttttgccctttaaggcacttgataaaaagtttaacatagaaattttattttgaaatttgtg |
247 |
Q |
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|||| |||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||| |
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| T |
13203293 |
cggt-gcagtaaattcgggataaactcgtgaaatcatgttttgc-------ggcatttgataaaaagtttaacatagaaattttattttagaatttgtg |
13203203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 196 - 247
Target Start/End: Complemental strand, 9784514 - 9784463
Alignment:
| Q |
196 |
ttaaggcacttgataaaaagtttaacatagaaattttattttgaaatttgtg |
247 |
Q |
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| T |
9784514 |
ttaaggcacttgataagaggtttaaaatagaaattttgtcttgaaatttgtg |
9784463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 37
Target Start/End: Complemental strand, 13204332 - 13204302
Alignment:
| Q |
7 |
tcgaagaaaatttaaaataatacatcttcta |
37 |
Q |
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| T |
13204332 |
tcgaagaaaatttaaaataatacatcttcta |
13204302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 119 - 182
Target Start/End: Complemental strand, 26611912 - 26611849
Alignment:
| Q |
119 |
catctatgctttgtgctagataagatcgaacggtggcagtaaatttgggataaactcgtgaaat |
182 |
Q |
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| T |
26611912 |
catccatgctttgtgctagataagatccaacggtggcattgaatttgggataagttcgtgaaat |
26611849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 200 - 250
Target Start/End: Complemental strand, 13521830 - 13521780
Alignment:
| Q |
200 |
ggcacttgataaaaagtttaacatagaaattttattttgaaatttgtgtat |
250 |
Q |
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| T |
13521830 |
ggcacctgataagaagtttaaagtagaaattttattttgaaatttgtgtat |
13521780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 200 - 250
Target Start/End: Complemental strand, 13611365 - 13611315
Alignment:
| Q |
200 |
ggcacttgataaaaagtttaacatagaaattttattttgaaatttgtgtat |
250 |
Q |
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||||| |||||| |||||||| |||||||||||||||||||||||||||| |
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| T |
13611365 |
ggcacctgataagaagtttaaagtagaaattttattttgaaatttgtgtat |
13611315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 158
Target Start/End: Original strand, 26612129 - 26612244
Alignment:
| Q |
49 |
tattagcgaaaacatcaagactatcttgtagctctttggcatgtgattgtagcatgacatcgt------atcccaacatctatgctttgtgctagataag |
142 |
Q |
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||||||| ||||||||| || | | |||||| | |||||| ||| | |||||||||||||| | |||||| |||| ||||||||||||||||||| |
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| T |
26612129 |
tattagcaaaaacatcacgaattttttgtagttttttggcgtgtaactgtagcatgacatcattcttttatcccatcatccatgctttgtgctagataag |
26612228 |
T |
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| Q |
143 |
atcgaacggtggcagt |
158 |
Q |
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||| || ||||||||| |
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| T |
26612229 |
atccaaaggtggcagt |
26612244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 250
Target Start/End: Original strand, 29912126 - 29912176
Alignment:
| Q |
200 |
ggcacttgataaaaagtttaacatagaaattttattttgaaatttgtgtat |
250 |
Q |
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| T |
29912126 |
ggcacttgataagaagtttaaagtagaaattttatcttaaaatttgtgtat |
29912176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 200 - 250
Target Start/End: Original strand, 9049974 - 9050024
Alignment:
| Q |
200 |
ggcacttgataaaaagtttaacatagaaattttattttgaaatttgtgtat |
250 |
Q |
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| T |
9049974 |
ggcacttgataaaaagtttaaaatagaaagtttattttgaaagttgtgtat |
9050024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 212 - 250
Target Start/End: Original strand, 39258862 - 39258900
Alignment:
| Q |
212 |
aaagtttaacatagaaattttattttgaaatttgtgtat |
250 |
Q |
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| T |
39258862 |
aaagtttaaaatggaaattttattttgaaatttgtgtat |
39258900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 250
Target Start/End: Original strand, 43638950 - 43638995
Alignment:
| Q |
204 |
cttgataaaaagtttaacatagaaattttattttgaaatttgtgtat |
250 |
Q |
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| T |
43638950 |
cttgataaaaagtttat-atagaaattttattttgagatttgtgtat |
43638995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 250
Target Start/End: Complemental strand, 8741107 - 8741050
Alignment:
| Q |
193 |
cctttaaggcacttgataaaaagtttaacatagaaattttattttgaaatttgtgtat |
250 |
Q |
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|||||| | ||||| |||| |||||||| ||||||||||||| ||| ||||||||||| |
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| T |
8741107 |
cctttacgacactttataacaagtttaaaatagaaattttatcttggaatttgtgtat |
8741050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 250
Target Start/End: Complemental strand, 31963113 - 31963065
Alignment:
| Q |
202 |
cacttgataaaaagtttaacatagaaattttattttgaaatttgtgtat |
250 |
Q |
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|||||||||| |||||||| || |||||||| ||||| ||||||||||| |
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| T |
31963113 |
cacttgataagaagtttaaaatggaaattttgttttggaatttgtgtat |
31963065 |
T |
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