View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18643_low_26 (Length: 239)
Name: NF18643_low_26
Description: NF18643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18643_low_26 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 14 - 239
Target Start/End: Original strand, 42702423 - 42702648
Alignment:
| Q |
14 |
ttctcagaggcagctacaaaaagttatcgataaggagagaatatggtcaaaactgacaacatctgaaagtatagaggttagttctgtgaaattttaaagt |
113 |
Q |
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| T |
42702423 |
ttctcagaggcagctacaaaaagttatcgataaggagagaatatggtcaaaactgacaacatctgaaagtatagaggttagttctgtgaaattttaaagt |
42702522 |
T |
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| Q |
114 |
caacttttttccttctaagaagaggatactctatggaatctagtaaaccatattcagttgaaatgactacacatatttaaactactgttgtgcctgaaat |
213 |
Q |
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| T |
42702523 |
caacttttttccttctaagaagaggatactctatggaatctagtaaatcatattcagttgaaatgactacacatatttaaactactgttgtgcctgaaat |
42702622 |
T |
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| Q |
214 |
gcattattctactgtttgactgatgt |
239 |
Q |
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| T |
42702623 |
gcattattctactgtttgactgatgt |
42702648 |
T |
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Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 42 - 96
Target Start/End: Complemental strand, 25715701 - 25715647
Alignment:
| Q |
42 |
gataaggagagaatatggtcaaaactgacaacatctgaaagtatagaggttagtt |
96 |
Q |
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| T |
25715701 |
gataaggagaaaatatggtcaagactgacaacatctgaaagcattgaggttagtt |
25715647 |
T |
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