View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18643_low_3 (Length: 678)
Name: NF18643_low_3
Description: NF18643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18643_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 18 - 637
Target Start/End: Complemental strand, 3209421 - 3208795
Alignment:
| Q |
18 |
ccagagaggaaggaactttaccctgaggtaagcaggcttgtaaatgaagtagta-atttctcttctctcgcaataattcattaaggaaagagtgtaagac |
116 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||| ||||||||||||||||||| |
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| T |
3209421 |
ccagagaggaaggagttttaccctgaggtaagcaggcttgtaaattaagtagtatatttctcttctttcgcaataattcactaaggaaagagtgtaagac |
3209322 |
T |
|
| Q |
117 |
agatgtaggaggaatcgtcttaggctaacaataaaatcagcgggaaaaaataaaattgtctcaaaagagtaatcatgttcttttgcatttctagtcatga |
216 |
Q |
| |
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|||||||| ||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||| ||||||||||| |
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| T |
3209321 |
agatgtagtaggaatcctcctaggctaacaataaaatcagcggaaaaaaataaaattgtctcaaaagtgtaatcccgttcttttgcatgtctagtcatga |
3209222 |
T |
|
| Q |
217 |
aaaatccaacaacaaaaaagggtgtgcaaagactcaagtgggagataagaagacaagcctgccacacaaaaggtttagaggaagaatctcat-gctcgaa |
315 |
Q |
| |
|
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||| || |
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| T |
3209221 |
aaactccaacaacaaaaaagggtgtgcaaagacccaagtgggagataagaagacaagcctgtcacacaaaaggtttataggaagaatctcatggctgaaa |
3209122 |
T |
|
| Q |
316 |
aaagtttttgaattatttccagccaaattcataggtttactctataagaaatgacaaccnnnnnnntctgtttttgtagcc-tatgaatgaagaaaatat |
414 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||| |||||||||||| |||| |
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|
| T |
3209121 |
aaagtttttgaattgattccagccaaattcattggtttactctataagaaatgacaacc-aaaaattctgttcctgtagccgtatgaatgaagacaata- |
3209024 |
T |
|
| Q |
415 |
agttcatggcttct----tttttctgctgatataaatttgcaatagtttttattctcatttcgccgttatgaatgacacgaagtgaaaacaaattct-aa |
509 |
Q |
| |
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|||||||||||||| ||| |||| ||||||||||||||||| |||||||||||||||| |||||||||| || ||||||||||||||||||||| || |
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|
| T |
3209023 |
agttcatggcttcttttctttctctgttgatataaatttgcaatggtttttattctcattttgccgttatgagtggcacgaagtgaaaacaaattctaaa |
3208924 |
T |
|
| Q |
510 |
atctcactcttttaactgatatctctcttttcca-ttacagattataaatgtgcttgacgggtctgaaaaccctcagtgcaccaccnnnnnnncacgcct |
608 |
Q |
| |
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||||||||||||| |||||||||||||||||||| || |||||| |||| |||||||||||||||||||||||| ||||||| || ||||||| |
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| T |
3208923 |
atctcactcttttcactgatatctctcttttccatttgcagattgcaaatctgcttgacgggtctgaaaaccctctgtgcaccgcccttttttcacgcct |
3208824 |
T |
|
| Q |
609 |
agacaagtttcgggtaatgcctcgctctc |
637 |
Q |
| |
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|||| || |||||||||||||| ||||| |
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| T |
3208823 |
cgacaggtctcgggtaatgcctcactctc |
3208795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 18 - 664
Target Start/End: Original strand, 15991994 - 15992632
Alignment:
| Q |
18 |
ccagagaggaaggaactttaccctgaggtaagcaggcttgtaaatgaagtagtaatttctcttctctcgcaataattcattaaggaaagagtgtaagaca |
117 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |
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|
| T |
15991994 |
ccagagaggaaggagctttaccctgaggtaagcagacttgtaaatgaagtagtaatttctcttctctcgcagtaattcattaaggaaagagtgcaagaca |
15992093 |
T |
|
| Q |
118 |
gatgtaggaggaatcgtcttaggctaacaataaaatcagcgggaaaaaa-taaaattgtctcaaaagagtaatcatgttcttttgcatttctagtcatga |
216 |
Q |
| |
|
||||||| ||||||| || ||||||||||||||||||||| | |||||| |||||||||| ||||||||||||| ||||||||||||| ||||||||||| |
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|
| T |
15992094 |
gatgtagtaggaatcctcctaggctaacaataaaatcagcagaaaaaaattaaaattgtcccaaaagagtaatcctgttcttttgcatgtctagtcatga |
15992193 |
T |
|
| Q |
217 |
aaaatccaacaacaaaaaagggtgtgcaaagactcaagtgggagataagaagacaagcctgccacacaaaaggtttagaggaagaatctcat-gctcgaa |
315 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||| ||| ||||| || ||||| |||||||||||||| ||| ||| |
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|
| T |
15992194 |
aaaatccaacaacaaaaaaaggtgtccaaagacccaagtgggagataagaagacaagtctgtcacac--aatgtttaaaggaagaatctcatggctggaa |
15992291 |
T |
|
| Q |
316 |
aaagtttttgaattatttccagccaaattcataggtttactctataagaaatgacaaccnnnnnnntctgtttttgtagcctatgaatgaagaaaatata |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |
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|
| T |
15992292 |
aaagtttttgaattatttccagccaaattcattggttctctctataagaaatgacaacc-aaaaaatctgtttctgtagcctatgaatgaagaaaatata |
15992390 |
T |
|
| Q |
416 |
gttcatggcttcttttttctgctgatataaatttgcaatagtttttattctcatttcgccgttatgaatgacacgaagtgaaaacaaattct-aaatctc |
514 |
Q |
| |
|
|||||||||| ||||||| || |||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||| ||||||| |
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|
| T |
15992391 |
gttcatggctcctttttt-tgttgatataaatttgcaatagtttctattctca---------tatgaacgacacgaagtgaaaacaaattctaaaatctc |
15992480 |
T |
|
| Q |
515 |
actcttttaactgatatctctcttttccat-tacagattataaatgtgcttgacgggtctgaaaaccctcagtgcaccaccnnnnnnncacgcctagaca |
613 |
Q |
| |
|
| |||| |||||||||||| ||||||| | |||||| ||||| |||||||||||||||||||||||||||||| || ||||||| |||| |
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| T |
15992481 |
ctttttttcactgatatctcttgtttccatatgcagattgtaaatcggcttgacgggtctgaaaaccctcagtgcactgcccttttttcacgcctcgaca |
15992580 |
T |
|
| Q |
614 |
agtttcgggtaatgcctcgctctc--atgtcctttcattattatgctgcttga |
664 |
Q |
| |
|
||| |||||||||||||| ||||| |||||| |||| ||||||||| ||||| |
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|
| T |
15992581 |
agtatcgggtaatgcctcactctctgatgtcc-ttcagtattatgctacttga |
15992632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 18 - 353
Target Start/End: Original strand, 37491659 - 37491994
Alignment:
| Q |
18 |
ccagagaggaaggaactttaccctgaggtaagcaggcttgtaaatgaagtagtaatttctcttctctcgcaataattcattaaggaaagagtgtaagaca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37491659 |
ccagagaggaaggaactttaccctgaggtaagcaggcttgtaaatgaagtagtaatttctcttctctcgcaataattcattaaggaaagagtgtaagaca |
37491758 |
T |
|
| Q |
118 |
gatgtaggaggaatcgtcttaggctaacaataaaatcagcgggaaaaaataaaattgtctcaaaagagtaatcatgttcttttgcatttctagtcatgaa |
217 |
Q |
| |
|
||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37491759 |
gatgtagtaggaatactcttaggctaacaataaaatcagcgggaaaaaataaaattgtctcaaaagagtaatcatgttcttttgcatttctagtcatgaa |
37491858 |
T |
|
| Q |
218 |
aaatccaacaacaaaaaagggtgtgcaaagactcaagtgggagataagaagacaagcctgccacacaaaaggtttagaggaagaatctcatgctcgaaaa |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
37491859 |
aaatccaacaacaaaaaagggtgtgcaaagactcaagtgggagataagaagacaagcctgccaaacaaaaggtttagaggaagaatctcatgctcgaaaa |
37491958 |
T |
|
| Q |
318 |
agtttttgaattatttccagccaaattcataggttt |
353 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
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|
| T |
37491959 |
agtttttgaattatttccagccaaattcataggttt |
37491994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 140 - 254
Target Start/End: Complemental strand, 23721146 - 23721037
Alignment:
| Q |
140 |
gctaacaataaaatcagcgggaaaaaataaaattgtctcaaaagagtaatcatgttcttttgcatttctagtcatgaaaaatccaacaacaaaaaagggt |
239 |
Q |
| |
|
||||||||||||||||| | | ||||||| ||| |||||||||||||| ||||||||||||| || | |||||||||| |||| || ||||||||| |
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|
| T |
23721146 |
gctaacaataaaatcagagtg----aataaaaatgtttcaaaagagtaatcttgttcttttgcatgtccaatcatgaaaaacccaa-aattaaaaagggt |
23721052 |
T |
|
| Q |
240 |
gtgcaaagactcaag |
254 |
Q |
| |
|
|||||||||| |||| |
|
|
| T |
23721051 |
gtgcaaagacccaag |
23721037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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