View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18643_low_30 (Length: 227)
Name: NF18643_low_30
Description: NF18643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18643_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 81 - 221
Target Start/End: Complemental strand, 15559124 - 15558984
Alignment:
| Q |
81 |
caccatctcgtcaatgccaaaaggagaattattaaaaatgaaaaatgaaactaactctaatcattaaatttctatgacacaacaattttacaacatgaca |
180 |
Q |
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| T |
15559124 |
caccatctcgtcaatgccaaaaggagaattattaaaaatgaaaaatgaaattaactctaatcattaattgtctatgacacaacaattttacaacatgaca |
15559025 |
T |
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| Q |
181 |
ttattcaaccatatcactcgggcatcagtaagtagaaaacc |
221 |
Q |
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| T |
15559024 |
ttattcaaccatatcactccggcatcagtaagtagaaaacc |
15558984 |
T |
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Target: chr4; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 15559500 - 15559431
Alignment:
| Q |
1 |
catgatatatttgaaaaaacggatacaaagtcttcgatacaaatcaactctaaaagagtcccaccaatca |
70 |
Q |
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| T |
15559500 |
catgatatatttgtaaaaatggatacaaagtcttcgatacaaatcaactctaatagagtcccaccaatca |
15559431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 221
Target Start/End: Complemental strand, 5087235 - 5087146
Alignment:
| Q |
133 |
aactctaatcattaaatttctatgacac-aacaattttacaacatgacattattcaaccatatcactcgggcatcagtaagtagaaaacc |
221 |
Q |
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| T |
5087235 |
aactctaatcattacatgtctacgccacgaacaattttacaacatgacagtaagcaaccatgtcactcaatcatcagtaagtacaaaacc |
5087146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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