View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18643_low_4 (Length: 615)
Name: NF18643_low_4
Description: NF18643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18643_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 518; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 17 - 601
Target Start/End: Complemental strand, 19750949 - 19750364
Alignment:
| Q |
17 |
gcataaaaagctaataagatatgtagaagtcccatatctacacagtcgatctctctcattccaatgtgatttgctttattcatgtgtcctctgcctagaa |
116 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19750949 |
gcataaaaagctaataagatatgcagaagtcccatatctacacagttgatctctctcattccaatgtgatttgctttattcatgtgtcctctgcctagaa |
19750850 |
T |
|
| Q |
117 |
acatgtcaggagccactgtttgcatgtgtcacattcatcgacgatcattcaccacccatgtcggcctcaggtgtcacaatatgccatattgaagaaataa |
216 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
19750849 |
acatgccaggagccactgtttgcatgtgtcacattcatcgacgatcattcaccacccatgtcggcctcaggtgtcacaatatgccatattgaagaaatta |
19750750 |
T |
|
| Q |
217 |
aagacatacaagtatcctaagaatagataaattcttagagtcttggtaannnnnnnnaattttaactctcactaaatcatgcattgacaaatcagagtta |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
19750749 |
aagacatacaagtatcctaagaatagataaattcttagagtcttggtaattttttttaattttaactctcactaaatcgtgcattgacaaatcagagtta |
19750650 |
T |
|
| Q |
317 |
ttttctaagtt-gttgtcatagtgaaattcatagaggtgacacaatgcacgaacacacactatagtgtaaatttgttttcataccaacagttgatatagg |
415 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19750649 |
ttttctaagtttgttgtcatagtgaaattcatagaggtgacacaatgcacgaacacacactaaagtgtaaatttgttttcataccaacagttgatatagg |
19750550 |
T |
|
| Q |
416 |
caccactcaatcactcattaacacacataacaaaaggtagagatcatatcatggaatgctttgtcaatacaaattctgaatcattaattggcataattgg |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
19750549 |
caccactcaatcactcattaacacacataacaaaaggtagagatcagatcatggaatgctttgtcaatacaaattatgaatcattaattggcataattgg |
19750450 |
T |
|
| Q |
516 |
accaagataagcatacatacaatcaagcaaatggtaatttcttataaaaattgagagcatgactttttctgtatggatttgaaatt |
601 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
19750449 |
accaagataagcatacatacaatcaagcaaatggtaatttcttataaaaattgagagcatgactttttctgtatggatgtgaaatt |
19750364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 19596446 - 19596488
Alignment:
| Q |
18 |
cataaaaagctaataagatatgtagaagtcccatatctacaca |
60 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
19596446 |
cataaaaaactaataacatatgtagaagtcccatatctacaca |
19596488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 503 - 570
Target Start/End: Original strand, 19644576 - 19644639
Alignment:
| Q |
503 |
ttggcataattggaccaagataagcatacatacaatcaagcaaatggtaatttcttataaaaattgag |
570 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||| | |||| |||||||||||||||||||||| |
|
|
| T |
19644576 |
ttggcaaaattggaccaagataa----tcatacaatcacgtaaattgtaatttcttataaaaattgag |
19644639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University