View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18643_low_7 (Length: 462)
Name: NF18643_low_7
Description: NF18643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18643_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 361; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 19 - 440
Target Start/End: Original strand, 34292432 - 34292852
Alignment:
| Q |
19 |
aataagctcttgatattttttgtataggtagatccaagtgttaatggaggtttagggtatgaaataacttgaaatttgttttcttctttccttcatgctt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
34292432 |
aataagctcttgatattttttgtataggtagatccaagtgttaatggaggtttagggtatgaaataacttgaaatttgttttcttctt-ccttcatgctt |
34292530 |
T |
|
| Q |
119 |
gtaatattttcaaggcttttagtggcttcctttcccaatgaataattaaatgctaaatttgagcattgtccaccaaagcattttttgctatttttaatac |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |
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| T |
34292531 |
gtaatattttcaaggcttttagtggcttcctttcccaatgaataattaaatgctaaatttgagcattgtcaaccaaagcattttttgctatttttaactc |
34292630 |
T |
|
| Q |
219 |
tattttcatcagagagccacttttgcaactgatcttcaattgttgtcacttcatagagccatttttgcacattaggtgcaatttcatatcctttccttct |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||| |
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| T |
34292631 |
tattttcatcagagagccacttttgcaactgatcttcaattgttgtcacatcatagacccatttttgcatattaggtgcaatttcatatcctttccttct |
34292730 |
T |
|
| Q |
319 |
ttcagtttcaacccttgtttgcaatgcttgttttatcattttcaacctctcaagttcttcctccaaatttgttgtgannnnnnngtgttgcgtcaaatat |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |
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| T |
34292731 |
ttcagtttcaacccttgtttgcaatgcttgttttatcattttcaacctctcaagttcttcctccaaatttgttgtgatttttttgtgttgtgtcaaatat |
34292830 |
T |
|
| Q |
419 |
ttgaaatgcttcatggttgact |
440 |
Q |
| |
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||||||||||||||| |||||| |
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| T |
34292831 |
ttgaaatgcttcatgattgact |
34292852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 224 - 440
Target Start/End: Original strand, 34567147 - 34567363
Alignment:
| Q |
224 |
tcatcagagagccacttttgcaactgatcttcaattgttgtcacttcatagagccatttttgcacattaggtgcaatttcatatcctttccttctttcag |
323 |
Q |
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||||||||||||||||||||||||| || |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34567147 |
tcatcagagagccacttttgcaactcattttcaattgttgtgacatcatagagccatttttgcacattaggtgcaatttcatatcctttccttctttcag |
34567246 |
T |
|
| Q |
324 |
tttcaacccttgtttgcaatgcttgttttatcattttcaacctctcaagttcttcctccaaatttgttgtgannnnnnngtgttgcgtcaaatatttgaa |
423 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |
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| T |
34567247 |
tttcaacccttgtttgcaatgcttgttttatcattttcaacctctcaagttcttcctccaaatttgttgtgatttttttgtgttgtgtcaaatatttgaa |
34567346 |
T |
|
| Q |
424 |
atgcttcatggttgact |
440 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
34567347 |
atgcttcatggttgact |
34567363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 19 - 188
Target Start/End: Original strand, 34566980 - 34567148
Alignment:
| Q |
19 |
aataagctcttgatattttttgtataggtagatccaagtgttaatggaggtttagggtatgaaataacttgaaatttgttttcttctttccttcatgctt |
118 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
34566980 |
aataagctcttgatattttttgtataggtagatccaagtgttaatggaggtttggggtatgaaataacttgaaatttgttttcttc-ttccttcatgctt |
34567078 |
T |
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| Q |
119 |
gtaatattttcaaggcttttagtggcttcctttcccaatgaataattaaatgctaaatttgagcattgtc |
188 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34567079 |
gtaatattttcaaggcttttagtggcttcctttcccaatgaataattaaatgctaaatttgagcattgtc |
34567148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 201
Target Start/End: Original strand, 34555400 - 34555494
Alignment:
| Q |
107 |
tccttcatgcttgtaatattttcaaggcttttagtggcttcctttcccaatgaataattaaatgctaaatttgagcattgtccaccaaagcattt |
201 |
Q |
| |
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||||||| ||| |||||| ||||| |||||||| ||||| |||||||||||| |||||| ||| ||||||| || | ||||||||| ||||| |
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| T |
34555400 |
tccttcaaccttataatatattcaatgcttttagaggcttgctttcccaatgagtaattatatgtcaaatttggacactttccaccaaaacattt |
34555494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 119; Significance: 1e-60; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 19 - 434
Target Start/End: Original strand, 15896656 - 15897070
Alignment:
| Q |
19 |
aataagctcttgatattttttgtataggtagatccaagtgttaatggaggtttagggtatgaaataacttgaaatttgttttcttctttccttcatgctt |
118 |
Q |
| |
|
|||| |||||||| || |||||| ||||||||||||||||||||| || ||||||||| || ||| ||| ||||||||||| ||| | |||||| |||| |
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| T |
15896656 |
aataggctcttgacatcttttgtgaaggtagatccaagtgttaatgaagctttagggtaagatatatctttaaatttgtttttttcct-ccttcaggctt |
15896754 |
T |
|
| Q |
119 |
gtaatattttcaaggcttttagtggcttcctttcccaatgaataattaaatgctaaatttgagcattgtccaccaaagcattttttgctatttttaatac |
218 |
Q |
| |
|
||||||| ||| | |||||||| |||| |||||||||||| ||||||||||||| || ||| |||||||||||||| ||||| || | || |||| | |
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| T |
15896755 |
gtaatatattctatccttttagttgcttgctttcccaatgagtaattaaatgctatatctgaacattgtccaccaaaacatttcttcttcttgttaacat |
15896854 |
T |
|
| Q |
219 |
tattttcatcagagagccacttttgcaactgatcttcaattgttgtcacttcatagagccatttttgcacattaggtgcaatttcatatcctttccttct |
318 |
Q |
| |
|
||||||||| ||||| ||| |||||| ||| || |||||| ||||||| ||| | |||||||||||||| | ||| ||||||||| ||| |||||||| |
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| T |
15896855 |
tattttcattagagatccatttttgccactcattttcaataattgtcacatcagatagccatttttgcacgatgggttcaatttcatgtcccttccttct |
15896954 |
T |
|
| Q |
319 |
ttcagtttcaacccttgtttgcaatgcttgttttatcattttcaacctctcaagttcttcctccaaatttgttgtgannnnnnngtgttgcgtcaaatat |
418 |
Q |
| |
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|||| | || ||| ||||||||||||||||||| |||||||| || ||| || || ||||||| ||| |||| | |||||| ||||||||| |
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| T |
15896955 |
ttcattgtccacctttgtttgcaatgcttgtttcatcatttttaagttcttgagctcctcctccagattgattgtaatttttttgtgttgtgtcaaatat |
15897054 |
T |
|
| Q |
419 |
ttgaaatgcttcatgg |
434 |
Q |
| |
|
|| ||||||||||||| |
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| T |
15897055 |
ttaaaatgcttcatgg |
15897070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 201
Target Start/End: Complemental strand, 129386 - 129302
Alignment:
| Q |
117 |
ttgtaatattttcaaggcttttagtggcttcctttcccaatgaataattaaatgctaaatttgagcattgtccaccaaagcattt |
201 |
Q |
| |
|
||||||||| |||| |||||||| ||||| |||||||||||| |||||| ||| ||||||| || | ||||||||| ||||| |
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|
| T |
129386 |
ttgtaatatactcaatgcttttagaggcttgctttcccaatgagtaattatatgtcaaatttggacactttccaccaaaacattt |
129302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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