View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18643_low_8 (Length: 459)
Name: NF18643_low_8
Description: NF18643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18643_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 13 - 444
Target Start/End: Complemental strand, 50459370 - 50458939
Alignment:
| Q |
13 |
aatatcaagttcagtaagagttgacaagagtgcaaatgcattaacatattcgtcagatataaccggtatatgaattctctttaacataggggtattaatg |
112 |
Q |
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| T |
50459370 |
aatatcaagttcagtaagagttgacaagagtgcaaatgcattaacatattcgtcagatataaccggtatatgaattctctttaacataggggtattaatg |
50459271 |
T |
|
| Q |
113 |
taaaaggtctccaaaccaggaccaaagtactccaatgaagtgagtttaaggcaatctaatgaacaaaggtttacaccctttttgatgttgttggatacga |
212 |
Q |
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| T |
50459270 |
taaaaggtctccaaaccaggaccaaagtactccaatgaagtgagtttaaggcaatctagtgaacaaaggtttacaccctttttgatgttgttggatacga |
50459171 |
T |
|
| Q |
213 |
catggcagtttttaacttcaagataactcaaggatgaactcactatctttggcattgatgatttgaactcacaatatattaagtgaagctcatcaactaa |
312 |
Q |
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| T |
50459170 |
catggcagtttttaacttcaagataacacaaggatgaactcactatctttggcattgatgatttgaactcacaatatattaagtgaagctcatcaagtaa |
50459071 |
T |
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| Q |
313 |
tcctaaattagacaccagacttgtaataaacagttcatccactttagtacttccaagtgtaagtgatctcaaattttttaacagaataaagtcacagttg |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
50459070 |
tcctaaattagacaccagacttgtaataaacagttcatccactttagtacttccaagtgtaagtgatctcaaatttttgaacagaataaagtcacagttg |
50458971 |
T |
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| Q |
413 |
gtgatattgtaaactagacaattttgtagatg |
444 |
Q |
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| T |
50458970 |
gtgatattgtaaactagacaattttgtagatg |
50458939 |
T |
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