View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18644_high_18 (Length: 250)
Name: NF18644_high_18
Description: NF18644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18644_high_18 |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 33420296 - 33420529
Alignment:
| Q |
1 |
gaaaacctaccaattgtttcataggacttccggtacgatgtttttgtggtctcataaacagcaatatagggtgcctccctacaatgtttccatggttttt |
100 |
Q |
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|||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33420296 |
gaaaacctaccaattgtttcataggacttctggttcgatgtttttgtggtctcataaacagcaatatagggtgcctccctacaatgtttccatggttttt |
33420395 |
T |
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| Q |
101 |
aactccaacagtgactgagaccgacatgcttttgcaggtttcttcatccaactctgaaactaatttgtaccgtatagtttctgaattttcggtcatcaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
33420396 |
aactccaacagtgactgagaccgacatgcttttgcaggtttcttcatccaactctgaaactaatttgtaccgtatagtttctgaattttcagtcatcaaa |
33420495 |
T |
|
| Q |
201 |
tgagtggatgattgattgaaatgaagtttgtcat |
234 |
Q |
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|||||||| ||||||||||||||||||||||||| |
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| T |
33420496 |
tgagtggacgattgattgaaatgaagtttgtcat |
33420529 |
T |
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