View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18644_high_2 (Length: 679)
Name: NF18644_high_2
Description: NF18644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18644_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 606; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 606; E-Value: 0
Query Start/End: Original strand, 11 - 660
Target Start/End: Complemental strand, 29788467 - 29787818
Alignment:
| Q |
11 |
cagagaggaaggtggagggaagatgttgatgaggggaagatggctctcgttcgtcagaaattcattgaagcaaaatatctgtcaacagatgagacgctgc |
110 |
Q |
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| T |
29788467 |
cagagaggaaggtggagggaagatgttgatgaggggaagatggctctcgttcgtcagaaattcattgaagcaaaatatctgtcaacagatgagacgctgc |
29788368 |
T |
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| Q |
111 |
gccaatcgaagcaatttgaagatgcattggatattttaagctcaaacaatgaactcttggtcaggtttctagattcacaaaatatttatcaaattccctc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29788367 |
gccaatcgaagcaatttgaagatgcattggatattttaagctcaaacaatgaactcttggtcaggtttctagattcacaaaatatttatcaaattccctc |
29788268 |
T |
|
| Q |
211 |
tactccacaggatgatgcaaatcacattactcttatcaaacctatgaagatgtttggcaatgataaatcttctggaaagggtaagaagaaggataggttg |
310 |
Q |
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| T |
29788267 |
tactccacaggatgatgcaaatcacattactcttatcaaacctttgaagatgtttggcaatgacaagtcttctggaaagggtaagaagaaggataggttg |
29788168 |
T |
|
| Q |
311 |
attaagaaaccagaaaactatgatcaagcagctgtatgggagaacaggaattatggatactctccggaatctactcgaatagtggtattgaagcctagtc |
410 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29788167 |
attaagaaaccagaaaattatgatcaagcagctgtatgggagaacaggaattatggatactctccggaatctactcgaatagtggtattgaagcctagtc |
29788068 |
T |
|
| Q |
411 |
ctgggagaacaaatgaacttaaggctttggtttctccaacaaatccatcgcctcaaagtttctatcaaggaaatggagatgataatgtacttgaatccat |
510 |
Q |
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| T |
29788067 |
ctgggagaacaaatgatcttaaggctttggtttctccaacaaatccatcgcctcaaagtttctatcagggaaatggagatgctaatgtacttgaatccat |
29787968 |
T |
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| Q |
511 |
agaagtggctaaagagattacattccaaatgcatgaaggcctaagaagctatcaaaagaataaaattttacattcttcggtattttccagtggctattcc |
610 |
Q |
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|||||| || |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29787967 |
agaagtagcaaaagagattacactccaaatgcatgaaggcctaagaagctaccaaaagaataaaattttacattcttcggtattttccagtggctattcc |
29787868 |
T |
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| Q |
611 |
agtgatgagaactcatttgacaaatcatatcatgatttggaagccatgtc |
660 |
Q |
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| T |
29787867 |
agtgatgagaactcatttgacaaatcatatcatgatttggaagccatgtc |
29787818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 29 - 153
Target Start/End: Original strand, 39872289 - 39872413
Alignment:
| Q |
29 |
gaagatgttgatgaggggaagatggctctcgttcgtcagaaattcattgaagcaaaatatctgtcaacagatgagacgctgcgccaatcgaagcaatttg |
128 |
Q |
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||||||||| ||||| |||||||||||| | || || |||||||| |||||||| |||||| |||||||||| | | || ||||||||| | |||| |
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| T |
39872289 |
gaagatgttaatgagaagaagatggctcttatccgccaaaaattcatggaagcaaagcgtctgtctacagatgagaggttacgtcaatcgaaggagtttg |
39872388 |
T |
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| Q |
129 |
aagatgcattggatattttaagctc |
153 |
Q |
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| || ||||||| |||||||||| |
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| T |
39872389 |
aggaaacattggaagttttaagctc |
39872413 |
T |
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