View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18644_high_4 (Length: 458)
Name: NF18644_high_4
Description: NF18644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18644_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 14 - 448
Target Start/End: Complemental strand, 14336194 - 14335761
Alignment:
| Q |
14 |
caaattcatctcaatatttggtctaggtgattggaaagttactaaaagaacgtagagagtgattggatacgagacttatgctgcagcagatctagatcct |
113 |
Q |
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| T |
14336194 |
caaattcatctcaatatttggtctaggtgattggaaagttactaaaagaacgtagagagtgattggatacgagacctatgctgcagcagatctagatcct |
14336095 |
T |
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| Q |
114 |
gttaaggaaaacttgactgatgagcaggaaggcacatgcaccaaagccaaagtctgagggtgtggaaacatagtgtcgtaagtttcataaaccattcggc |
213 |
Q |
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| T |
14336094 |
gttaaggaaaacttgactgatgagcaggaaggcacatgcaccaaagccaaagtctgagggtgtggaaacatagtgtcgtaagtttcataaaccattcggc |
14335995 |
T |
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| Q |
214 |
ctgataaagcataaagggaagaaagagatctaagaaagaaacagtaacgagagtaaaggtttctaataaaaaccctaaccccctaaatcatgtaacagct |
313 |
Q |
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| T |
14335994 |
ctgataaagcataaagggaagaaagagatctaagaaagaaacagtaacgagagtaaaggtttctaataaaaaccctaaccccctaaatcatgtaacagct |
14335895 |
T |
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| Q |
314 |
ttactgtgaggtaacctttctcattagttatcattagatacctctgttaatcttgttttcttcnnnnnnnccaaatttctttcatccctatactcctttt |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
14335894 |
ttactgtgaggtaacctttctcattagttatcattagatacctctgttaatcttgttttcttc-ttttttccaaatttctttcatccctatactcctttt |
14335796 |
T |
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| Q |
414 |
caagcattcgatgttgaaaaaactttacacctatg |
448 |
Q |
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| T |
14335795 |
caagcattcgacgttgaaaaaactttacacctatg |
14335761 |
T |
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