View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18644_high_5 (Length: 452)
Name: NF18644_high_5
Description: NF18644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18644_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 13 - 432
Target Start/End: Complemental strand, 36534150 - 36533730
Alignment:
| Q |
13 |
aatatttgacttcaatcatatttaccataaaa-gtcatataaatgataataatttgtgattcattgacaatgtaaaatgttttaaggtgcatggtcaaaa |
111 |
Q |
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|||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||| |||||||||||||||| ||||||||||||| |
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| T |
36534150 |
aataattgacttcaatcatatttaccataaaaagtcatataaatgatagtaatttgtgatggattgacagtgtaaaatgttttaagttgcatggtcaaaa |
36534051 |
T |
|
| Q |
112 |
ttaatctatttttgaaaccttttggcatcacaagcaaactttaaaggtaaactcatgaaaatttgaaccaactttttcttggaatgaggtatatctttta |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36534050 |
ttaatctatttttgaaaccttttggcatcacaagcaaactttaaaggaaaactcatgaaaatttgaaccaactttttcttggaatgaggtatatctttta |
36533951 |
T |
|
| Q |
212 |
atgtgattaatccaattgaagtaatccattaatgattagtgaactaaccttgaaacttctatatgctgattgaataataatagctgcttcttcttcattc |
311 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36533950 |
atgtgaataatccaattgaagtaatccattaatgattagtgaactaaccttgaaacttctatatgctgattgaataataatagctgcttcttcttcattc |
36533851 |
T |
|
| Q |
312 |
aatgatttggagtttgaatttttccctttgtcaattacattctcaacagtttcttcactctttgtttcttctttatcactcaacaaatcttcctgtatgg |
411 |
Q |
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|||||||||||||| ||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
36533850 |
aatgatttggagttacaatttgatctattgtctattacattctcaacagtttcttcactctttgtttcttctttatcactcaacaaatcttcttgtatgg |
36533751 |
T |
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| Q |
412 |
actgtgtaacagtgacttctg |
432 |
Q |
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| T |
36533750 |
actgtgtaactgtgacttctg |
36533730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 39156714 - 39156669
Alignment:
| Q |
13 |
aatatttgacttcaatcatatttaccataaaagtcatataaatgat |
58 |
Q |
| |
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|||||||||||||||||||| |||| ||||||||||| ||||||| |
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| T |
39156714 |
aatatttgacttcaatcatacataccttaaaagtcatacaaatgat |
39156669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 22237841 - 22237796
Alignment:
| Q |
13 |
aatatttgacttcaatcatatttaccataaaagtcatataaatgat |
58 |
Q |
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|||||||||||| |||||||| |||| |||||||||||||| |||| |
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| T |
22237841 |
aatatttgactttaatcatatctaccttaaaagtcatataattgat |
22237796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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