View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18644_high_9 (Length: 316)

Name: NF18644_high_9
Description: NF18644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18644_high_9
NF18644_high_9
[»] chr8 (1 HSPs)
chr8 (4-300)||(33716230-33716526)


Alignment Details
Target: chr8 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 4 - 300
Target Start/End: Original strand, 33716230 - 33716526
Alignment:
Q  4 attcttctgacagggggcagttaaattgaggaagcttgacctgcagtacttgtctcttccaaaacatgtttgccaaatttcacctgggccaaattatgac 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33716230 attcttctgacagggggcagttaaattgaggaagcttgacctgcagtacttgtctcttccaaaacatgtttgccaaatttcacctgggccaaattatgac 33716329  T
Q  104 tttttctcatcagtcatgcgctttataatatcatctcctgtggtatgtgaatggttgctgcttctttttctcttgagaatatgaaaatgaaagaatgttt 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33716330 tttttctcatcagtcatgcgctttataatatcatctcctgtggtatgtgaatggttgctgcttctttttctcttgagaatatgaaaatgaaagaatgttt 33716429  T
Q  204 taagataaatttggttttgagtatttgtttgattttagctcaagaatgatgttgcaagatgaatttcaaaatagaactttggcgaacatttagatat 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  33716430 taagataaatttggttttgagtatttgtttgattttagctcaagaatgatgttgcaagatgaatttcaaaatagaactttggtgaacatttagatat 33716526  T

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