View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18644_low_1 (Length: 832)
Name: NF18644_low_1
Description: NF18644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18644_low_1 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 757; Significance: 0; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 757; E-Value: 0
Query Start/End: Original strand, 11 - 814
Target Start/End: Original strand, 336200 - 337004
Alignment:
| Q |
11 |
gtagcataggtatagtatatttgacgatgctgtgtaaatggaatagtcgtctatatatagttctatttgggctctttaatgcttttttatgatataagct |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
336200 |
gtagcataggtatagtatatttgacgatgctgtgtaaatggaatagtcgtctatatttagttctatttgggctctttaatgcttttttatgatataagct |
336299 |
T |
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| Q |
111 |
gcagatatttcagtgcgtacttgtttt-ttataagcagaagagtttattcgagagattagtactcaaatgcaaatacaaaaattcaatgtttctgcatgt |
209 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
336300 |
gcagatatttcagtgcgtacttgtttttttataagcagaagagtttattcgagagattagtactcaaatgcaaatacaaaaattcaatttttctgcatgt |
336399 |
T |
|
| Q |
210 |
actacgtagtatttttcaagattcttctatgtcattgatgattatcctcaaagataagtttgaaactttttaattccacatttactaattggtgatcact |
309 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
336400 |
actacgtagtatttttcaagattcttctgtgtcattgatgattatcctcaaagataagtttgaaactttttaattccacatttactaattggtgatcact |
336499 |
T |
|
| Q |
310 |
tattttgcttcagatactaacaacgagactaaacgtgaggattggaatcaatcagagaatagaagtccgtcaaaaaatccaaatcagacggtttcattac |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
336500 |
tattttgcttcagatactaacaacgagactaaacgtgaggattggaatcaatcagacaatagaagtccgtcaaaaaatccaaatcagacggtttcattac |
336599 |
T |
|
| Q |
410 |
ttccatctaaacttccatctagagctcatttaccttcttgtgctggtacacatgattttgctcaaaatttctgtctagtcattcatttgcatctcatgtt |
509 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
336600 |
ttccatctaaacttccatctagagctcatttaccttcttgtgctggtacacatgattttgctcaaaatttctgtctagtcattcatttgcatctcatgtt |
336699 |
T |
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| Q |
510 |
tttaatggcatttattttttcctttgaatatgttcgttcatttgtagtaaatggtgaatctgatcatccaagactcgacatccctggtgctgattacaat |
609 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
336700 |
tttaatggcatttattttttcctttgaatatgttcgttcttttgtagtaaatggtgaatctgatcatccaagactcgacatccctggtgctgattacaat |
336799 |
T |
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| Q |
610 |
caagtcaataacaaggtagatcaattcagtaattgcagactttgtgaattttccttcgaactttaaggaatatatttttactgataggatgctgatggta |
709 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
336800 |
caagtcaataacaaggtagatcaattcagtaattgcaggctttgtgaattttcctttgaactttaaggaatatatttttactgataggatgctgatggta |
336899 |
T |
|
| Q |
710 |
agagttcaacttcaactgtgagcaatgttggaagttccaatagtcatgcatccccaacaagtgcagcgagcattccacgatctccttcttccaactctaa |
809 |
Q |
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||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
336900 |
agagttcgacttcaactgtgagcaatgctggaagttccaatagtcatgcatctccaacaagtgcagcgagcattccacgatctccttcttccaactctaa |
336999 |
T |
|
| Q |
810 |
tcaac |
814 |
Q |
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||||| |
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| T |
337000 |
tcaac |
337004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 421 - 462
Target Start/End: Original strand, 42171893 - 42171934
Alignment:
| Q |
421 |
cttccatctagagctcatttaccttcttgtgctggtacacat |
462 |
Q |
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|||||| |||||||||||||||| |||| ||||||||||||| |
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| T |
42171893 |
cttccagctagagctcatttaccctcttttgctggtacacat |
42171934 |
T |
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