View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18644_low_12 (Length: 298)
Name: NF18644_low_12
Description: NF18644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18644_low_12 |
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| [»] scaffold0651 (3 HSPs) |
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Alignment Details
Target: scaffold0651 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: scaffold0651
Description:
Target: scaffold0651; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 18 - 287
Target Start/End: Original strand, 3994 - 4263
Alignment:
| Q |
18 |
atcaccattttcatcaacctacaatatgtccgctttcttaagtattgttatatttcaataagaagtttaattttaattattgtgagtgtacaaaatggca |
117 |
Q |
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| T |
3994 |
atcaccattttcatcaacctacaatatgtccactttcttaagtattgttatatttcaataagaagtttaattttaattattgtgagtgtacaaaatggca |
4093 |
T |
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| Q |
118 |
ctttgcagcaaggttgaagaaataatatatacccaagagaagaaaacaaagaggcatatgattttgatgtaaacgaatgcgagtctaaaaggagtgatga |
217 |
Q |
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| T |
4094 |
ctttgcagcaaggttgaagaaataatatatacccaagagaagaaaacaaagagacataggactttgatgtaagcgaatgcgagtctaaaaggagtgagga |
4193 |
T |
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| Q |
218 |
atttatgcttgagacccctttgcacaatcttttctcttttatccaaagacaagcttgagaagttgttgat |
287 |
Q |
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| T |
4194 |
acctaagcttgagagccctctgcacaatcttttctcttttatccaaagacaagcttgagaagttgttgat |
4263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0651; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 119 - 287
Target Start/End: Complemental strand, 1730 - 1562
Alignment:
| Q |
119 |
tttgcagcaaggttgaagaaataatatatacccaagagaagaaaacaaagaggcatatgattttgatgtaaacgaatgcgagtctaaaaggagtgatgaa |
218 |
Q |
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| T |
1730 |
tttgtagcaaggttgaagaaataatatatacccaagagaagaaaacaaagaggcataggattttgatgtaaacgaatgcgagtctaaaaggagtgaggaa |
1631 |
T |
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| Q |
219 |
tttatgcttgagacccctttgcacaatcttttctcttttatccaaagacaagcttgagaagttgttgat |
287 |
Q |
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| T |
1630 |
tttatgcttgagacccctttgtacaatcttttctcttttatccaaagacaagcttgagaagttgttgat |
1562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0651; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 1843 - 1799
Alignment:
| Q |
18 |
atcaccattttcatcaacctacaatatgtccgctttcttaagtat |
62 |
Q |
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| T |
1843 |
atcaccattttcatcaacctacaaaatatcctctttcttatgtat |
1799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 18 - 287
Target Start/End: Complemental strand, 31319676 - 31319407
Alignment:
| Q |
18 |
atcaccattttcatcaacctacaatatgtccgctttcttaagtattgttatatttcaataagaagtttaattttaattattgtgagtgtacaaaatggca |
117 |
Q |
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| T |
31319676 |
atcaccattttcatcaacctacaatatgtccactttcttaagtattgttatatttcaataagaagtttaattttaattattgtgagtgtacaaaatggca |
31319577 |
T |
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| Q |
118 |
ctttgcagcaaggttgaagaaataatatatacccaagagaagaaaacaaagaggcatatgattttgatgtaaacgaatgcgagtctaaaaggagtgatga |
217 |
Q |
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| T |
31319576 |
ctttgcagcaaggttgaagaaataatatatacccaagagaagaaaacaaagagacataggactttgatgtaagcgaatgcgagtctaaaaggagtgagga |
31319477 |
T |
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| Q |
218 |
atttatgcttgagacccctttgcacaatcttttctcttttatccaaagacaagcttgagaagttgttgat |
287 |
Q |
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| T |
31319476 |
acctaagcttgagagccctctgcacaatcttttctcttttatccaaagacaagcttgagaagttgttgat |
31319407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 119 - 287
Target Start/End: Complemental strand, 31331816 - 31331648
Alignment:
| Q |
119 |
tttgcagcaaggttgaagaaataatatatacccaagagaagaaaacaaagaggcatatgattttgatgtaaacgaatgcgagtctaaaaggagtgatgaa |
218 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |
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| T |
31331816 |
tttgtagcaaggttgaagaaataatatatacccaagagaagaaaacaaagaggcataggattttgatgtaaacgaatgcgagtctaaaaggagtgaggaa |
31331717 |
T |
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| Q |
219 |
tttatgcttgagacccctttgcacaatcttttctcttttatccaaagacaagcttgagaagttgttgat |
287 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31331716 |
tttatgcttgagacccctttgtacaatcttttctcttttatccaaagacaagcttgagaagttgttgat |
31331648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 31331929 - 31331885
Alignment:
| Q |
18 |
atcaccattttcatcaacctacaatatgtccgctttcttaagtat |
62 |
Q |
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| T |
31331929 |
atcaccattttcatcaacctacaaaatatcctctttcttatgtat |
31331885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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