View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18644_low_16 (Length: 268)
Name: NF18644_low_16
Description: NF18644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18644_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 231; Significance: 1e-127; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 17 - 251
Target Start/End: Original strand, 13760137 - 13760371
Alignment:
| Q |
17 |
tatgcagcttccaataatttcccttcccatacaaaaatatacggttcatacgacgccgttttagacgatccagacgttgacgcggtctatgtgccgcttc |
116 |
Q |
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| T |
13760137 |
tatgcagcttccaataatttcccttcccatacaaaaatatacggttcatacgacgccgttttagacgatccagacgttgacgcggtctatgtgccgcttc |
13760236 |
T |
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| Q |
117 |
cgactagcttgcaccttcactgggcagttcttgctgctcaaaagaagaaacacttgttgcttgagaaaccagttgctttaaatgttggggaacttgataa |
216 |
Q |
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| T |
13760237 |
cgactagcttgcaccttcattgggcagttcttgctgctcaaaagaagaaacacttgttgcttgagaaaccagttgctttaaatgttggggaacttgataa |
13760336 |
T |
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| Q |
217 |
gattttggaagcttgtgaatctaatggattgcagt |
251 |
Q |
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| T |
13760337 |
gattttggaagcttgtgaatctaatggattgcagt |
13760371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 19 - 251
Target Start/End: Original strand, 13741793 - 13742025
Alignment:
| Q |
19 |
tgcagcttccaataatttcccttcccatacaaaaatatacggttcatacgacgccgttttagacgatccagacgttgacgcggtctatgtgccgcttccg |
118 |
Q |
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| T |
13741793 |
tgcagcttcaaacaacttcccttctcatgccaaagtatatggctcatacgacgcggttttagacgatccagacgtcgacgttgtctacattccgcttccg |
13741892 |
T |
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| Q |
119 |
actagcttgcaccttcactgggcagttcttgctgctcaaaagaagaaacacttgttgcttgagaaaccagttgctttaaatgttggggaacttgataaga |
218 |
Q |
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| T |
13741893 |
actagcttgcaccttcactgggcagttcttgctgctcaaaagaagaaacacttgttgcttgataaaccagttgctttaaatgttggagaacttgataaga |
13741992 |
T |
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| Q |
219 |
ttttggaagcttgtgaatctaatggattgcagt |
251 |
Q |
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| T |
13741993 |
ttttggaagcttgtgaatctaatggactgcagt |
13742025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 19 - 251
Target Start/End: Original strand, 13747293 - 13747525
Alignment:
| Q |
19 |
tgcagcttccaataatttcccttcccatacaaaaatatacggttcatacgacgccgttttagacgatccagacgttgacgcggtctatgtgccgcttccg |
118 |
Q |
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| T |
13747293 |
tgcagcttcaaacaacttcccttctcatgccaaagtatatggctcatacgacgcggttttagacgatccagacgtcgacgttgtctacattccgcttccg |
13747392 |
T |
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| Q |
119 |
actagcttgcaccttcactgggcagttcttgctgctcaaaagaagaaacacttgttgcttgagaaaccagttgctttaaatgttggggaacttgataaga |
218 |
Q |
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| T |
13747393 |
actagcttgcaccttcactgggcagttcttgctgctcaaaagaagaaacacttgttgcttgataaaccagttgctttaaatgttggagaacttgataaga |
13747492 |
T |
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| Q |
219 |
ttttggaagcttgtgaatctaatggattgcagt |
251 |
Q |
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| T |
13747493 |
ttttggaagcttgtgaatctaatggactgcagt |
13747525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 19 - 249
Target Start/End: Original strand, 13731435 - 13731661
Alignment:
| Q |
19 |
tgcagcttccaataatttcccttcccatacaaaaatatacggttcatacgacgccgttttagacgatccagacgttgacgcggtctatgtgccgcttccg |
118 |
Q |
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||||||||| || || |||||||| ||| | ||| ||||||| |||||| ||||||| ||||||||||||||||| |||| ||||| | ||||||||| |
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| T |
13731435 |
tgcagcttcaaacaacttcccttctcatgccaaagtatacggctcatacaacgccgtattagacgatccagacgtcgacgttgtctacattccgcttccg |
13731534 |
T |
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| Q |
119 |
actagcttgcaccttcactgggcagttcttgctgctcaaaagaagaaacacttgttgcttgagaaaccagttgctttaaatgttggggaacttgataaga |
218 |
Q |
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| T |
13731535 |
actagcctgcaccttcattgggcagttcttgctgctcagaagaagaaacacttgttgcttcataagccagttgctttaaatgttggtgaacttgataaaa |
13731634 |
T |
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| Q |
219 |
ttttggaagcttgtgaatctaatggattgca |
249 |
Q |
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| T |
13731635 |
ttct----tcttgtgaatctaatggattgca |
13731661 |
T |
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