View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18644_low_20 (Length: 251)
Name: NF18644_low_20
Description: NF18644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18644_low_20 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 16 - 251
Target Start/End: Original strand, 33420069 - 33420304
Alignment:
| Q |
16 |
atcatgtttcataaacaagatcactatattagctttatcttgtttaagaataaatatgtatcatcaaacaatgatatctattaggtactcttcttcaccc |
115 |
Q |
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| T |
33420069 |
atcatgtttcataaacaagatcactatattagctttatcttgtttaagaataaatatgtatcatcaaacaatgatatctattaggtactcttcttcaccc |
33420168 |
T |
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| Q |
116 |
acatgcaacaaatgagacccttcttctatgatcttcaaaccagcctcgttcgctcgactaagatgctcacaaggactaagctcaaatccaacatggctca |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33420169 |
acatgcaacaaatgagacccttcttctatgatcttcaaaccagcctcgttcgctcgactaagatgctcacaaggactaagctcaaatccaacatggctca |
33420268 |
T |
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| Q |
216 |
tttcccctgcatctaacaacaaactatgaaaaccta |
251 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
33420269 |
tttcccctgcatctaacaacaaactatgaaaaccta |
33420304 |
T |
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