View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18644_low_3 (Length: 653)
Name: NF18644_low_3
Description: NF18644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18644_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 312; Significance: 1e-175; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 12 - 331
Target Start/End: Original strand, 41045775 - 41046094
Alignment:
| Q |
12 |
catcatcattccattcatttccattgtaacatcttgtgaaggtattgcttgatcatgaagcaaggcataatgtgccatgaattgttaacatggtgatcag |
111 |
Q |
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| T |
41045775 |
catcatcattccattcatttccattgtaacatcttgtgaaggtattgcttgatcatgaagcaaggcataatgtgccatgaattgttaacatggtgatcag |
41045874 |
T |
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| Q |
112 |
aaagaaaagaaacaaggaattacaggattaatgcagggaaagattttgattttgttgattggtgttttttggtcaaattgaaaatggtgtgaagaaatgg |
211 |
Q |
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| T |
41045875 |
aaagaaaagaaacaaggaattacaggattaatgcagggaaagattttgattttgttgattggtgttttttggtcaaattgaaaatggtgtgaagaaatgg |
41045974 |
T |
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| Q |
212 |
aggagagaaatgagaggcttgattgaaggatgtgcatgaattggagccttattgcttcagctgatctcaaaattaatttcattttattatgaggaaaaaa |
311 |
Q |
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| T |
41045975 |
aggagagaaatgagaggcttgattgaaggatgtgcatgaattggagacttattgcttcagctgatctcaaaatcaatttcattttattatgaggaaaaaa |
41046074 |
T |
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| Q |
312 |
tgttctgtagtttaggccac |
331 |
Q |
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| T |
41046075 |
tgttctgtagtttaggccac |
41046094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 401 - 545
Target Start/End: Original strand, 41046164 - 41046309
Alignment:
| Q |
401 |
gattcataactacatgaataggttttaagtttaagacgtgtcaactaaatggtaagagcttgaatttgtaacgtcaaagtatatggtttaaattccacct |
500 |
Q |
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| T |
41046164 |
gattcataactacatgaataggttttaagtttaagacgtgtcaactaaatggtaagagcttgaatttataacgtcaaagtatatggtttaaattccacct |
41046263 |
T |
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| Q |
501 |
atgttgt-aaatgttcattaatggcatcgcttttaataataatttc |
545 |
Q |
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| T |
41046264 |
atgttgtaaaatgttcattaatggcatcgcttttaataataatttc |
41046309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 593 - 636
Target Start/End: Original strand, 41046340 - 41046383
Alignment:
| Q |
593 |
tactaactggtttattttataccattgtcactcagttacatttt |
636 |
Q |
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| T |
41046340 |
tactaactgatttattttataccattgtcactcagttacatttt |
41046383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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