View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18644_low_4 (Length: 458)
Name: NF18644_low_4
Description: NF18644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18644_low_4 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 1 - 458
Target Start/End: Original strand, 33715792 - 33716249
Alignment:
| Q |
1 |
atgggaggtagtttggaatattacatttttctacagttgtcttgttttagttttattattactcttttgcatgaatgcaaagcaggcatttacttgagaa |
100 |
Q |
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| T |
33715792 |
atgggaggtagtttggaatattacatttttctacagttgtcttgttttagttttattattactcttttgcatgaatgcaaagcaggcatttacttgagaa |
33715891 |
T |
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| Q |
101 |
agtgagagatatgttgatattacaattacttgttttcgtgnnnnnnnggttcacttgcctaggacagtcaacttgaccttacatgttatattacgcctca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33715892 |
agtgagagatatgttgatattacaattacttgttttcgtgtttttttggttcacttgcctaggacagtcaacttgaccttacatgttatattacgcctca |
33715991 |
T |
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| Q |
201 |
taaactgcaggaggtaattgttgatgacccagatttagttattgaagatgttgattttagtgataaatacttagcgctaattgtgagggaaaatcgaaat |
300 |
Q |
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| T |
33715992 |
taaactgcaggaggtaattgttgatgacccagatttagttattgaagatgttgattttagtgataaatacttagcgctaattgtgagggaaaatcgaaat |
33716091 |
T |
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| Q |
301 |
tttcaactttgttcagttggactgccattgcctttcgagaaggtaatcaaagagaatttgctataatatgctcttacagccaagttcatgatgtaattgt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33716092 |
tttcaactttgttcagttggactgccattgcctttcgagaaggtaatcgaagagaatttgctataatatgctcttacagccaagttcatgatgtaattgt |
33716191 |
T |
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| Q |
401 |
gatttatcatctaattgaaatattgctaagtccaccttattcttctgacagggggcag |
458 |
Q |
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| T |
33716192 |
gatttatcatctaattgaaatattgctaagtccacctcattcttctgacagggggcag |
33716249 |
T |
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