View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18644_low_7 (Length: 389)
Name: NF18644_low_7
Description: NF18644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18644_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 146; Significance: 8e-77; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 190 - 367
Target Start/End: Original strand, 46185519 - 46185697
Alignment:
| Q |
190 |
atacattgtatgaaatgctcttt-gtgttttttaatagacctgaagtcaaaagtctagttcgtaataaatatcaagtaggtcacttagnnnnnnnggtca |
288 |
Q |
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| T |
46185519 |
atacattgtatgaaatgctcttttgtgttttttaatagacctgaagtcaaaagtctagttcgtaataaatatcaagtaggtcacttagtttatttggtga |
46185618 |
T |
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| Q |
289 |
ttctgatttatgccaaaaccatcctggacgaattgaaacatcacattctgctggtattctcacctgtgttcagatacct |
367 |
Q |
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| T |
46185619 |
ttctgatttatgccaaaaccatcctggacgaattgaaacatcacattctgctggtattctcacctgtgttcagatacct |
46185697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 48 - 194
Target Start/End: Original strand, 46185337 - 46185483
Alignment:
| Q |
48 |
tttacattctaaatgtttgatagtgaacaaattcagaagaaaagagaatgatcgagaagacgaagtggaagctcctcgagagaagacgaagcatcatgaa |
147 |
Q |
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| T |
46185337 |
tttacattctaaatgtttgatagtgaacaaattcagaagaaaagagaatgatcgagaagacgaagtggaagctcctccagagaagacgaagcatcatgaa |
46185436 |
T |
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| Q |
148 |
gtaacaattcgtttcaatgtgactgttggacctgacctgagtataca |
194 |
Q |
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| T |
46185437 |
gtaacaattcgtttcaatgtgactgttgcacctgacctgagtataca |
46185483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 250 - 344
Target Start/End: Original strand, 46169863 - 46169957
Alignment:
| Q |
250 |
gtaataaatatcaagtaggtcacttagnnnnnnnggtcattctgatttatgccaaaaccatcctggacgaattgaaacatcacattctgctggta |
344 |
Q |
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| T |
46169863 |
gtaataaatgtcaagtaggtcacttagtttttttggtgattctgatttatgccaaaaccatcctggacgaattgaaacatcacattctgctggta |
46169957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 13 - 68
Target Start/End: Original strand, 46185251 - 46185306
Alignment:
| Q |
13 |
aatatggtgagttttgtttaattttcatttggtactttacattctaaatgtttgat |
68 |
Q |
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| T |
46185251 |
aatatggtgagttttgtttaattttcatttggtactttacattctaaatgtttgat |
46185306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 63 - 161
Target Start/End: Complemental strand, 5895340 - 5895242
Alignment:
| Q |
63 |
tttgatagtgaacaaattcagaagaaaagagaatgatcgagaagacgaagtggaagctcctcgagagaagacgaagcatcatgaagtaacaattcgttt |
161 |
Q |
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| T |
5895340 |
tttgatagtgaacaaattcagatgagaagagaatgattgagatgacaaagtggaagctccaccaaagaagacgaagcaccgggaagtaacaatttgttt |
5895242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 37 - 94
Target Start/End: Complemental strand, 5895400 - 5895343
Alignment:
| Q |
37 |
tcatttggtactttacattctaaatgtttgatagtgaacaaattcagaagaaaagaga |
94 |
Q |
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| T |
5895400 |
tcatttggtactttacattctaactatttgatagtgatcaaattcagatgagaagaga |
5895343 |
T |
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