View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18644_low_8 (Length: 386)
Name: NF18644_low_8
Description: NF18644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18644_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 16 - 372
Target Start/End: Complemental strand, 43667784 - 43667423
Alignment:
| Q |
16 |
atgacacaagtaatagcactagttatagcatgtttgattccgcgttgatgtggtgctaaacacaaggtggttgaactctacatggcaaagtttatgttct |
115 |
Q |
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| T |
43667784 |
atgacacaagtaatagcactagttatagcatgtttgattccgctttgatgtggtgctaaacacaaggtggttgaactctacatggcaaagtttatgttct |
43667685 |
T |
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| Q |
116 |
taatggaaaaaactcaattcttacattaaatagatatgagacttaaaatgagtttacaaagaattacaaatccattttataaaaatgacttagattcaat |
215 |
Q |
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| T |
43667684 |
taatggaaaaaactcaattcttacattaaatagatatgagacttaaaatgagtttacaaagaattacaaatccattttataaaaatgacttagattcaat |
43667585 |
T |
|
| Q |
216 |
ataaaaacataataaatagtg-----atgttacattgtccttttatgtatagtttttcaaattcacgttaaacaataaactcaattcatataattcattc |
310 |
Q |
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| T |
43667584 |
ataaatacataataaatagtgatgtgatgttacattgtccttttatgtatagtttttcaaattcacgttaaacaataaactcaattcatataattcattc |
43667485 |
T |
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| Q |
311 |
ttctaattttatgtaatcaaattacaaaatcaacatagcaaattatttcctcctgtagtact |
372 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43667484 |
ttctaattatatgtaatcaaattacaaaatcaacatagcaaattatttcctcctgtagtact |
43667423 |
T |
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