View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18644_low_9 (Length: 375)
Name: NF18644_low_9
Description: NF18644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18644_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 18 - 366
Target Start/End: Original strand, 5179399 - 5179750
Alignment:
| Q |
18 |
acaaagtattcaaaaagttgaattattagcatttcatttcacacnnnnnnnnnnnnnn---ctcaagaaaaaagcatataacaaatattggaactaaacc |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
5179399 |
acaaagtattcaaaaagttgaattattagcatttcatttcacacaaaaaaaaaaaaaaaaactcaagaaaaaagcatataacaaatattggaactaaacc |
5179498 |
T |
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| Q |
115 |
aaccatatgcttgtgatccatcatgcatgatgggcaaggctgaatacaatccaacatgttcactttcatgtccatagtagccatagttatgaagaggtgt |
214 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5179499 |
aaccatgtgcttgtgatccatcatgcatgatgggcaaggctgaatacaatccaacttgttcactttcatgtccatagtagccatagttatgaagaggtgt |
5179598 |
T |
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| Q |
215 |
agggttataataaaagcctgttggaacagcttcagcagcagcagtggaaggagcacctatattcatttgtgaagagaaagataaaccaaaaatgttacta |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5179599 |
cgggttataataaaagcctgttggaacagcttcagcagcagcagtggaaggagcacctatattcatttgtgaagagaaagataaaccaaaaatgttacta |
5179698 |
T |
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| Q |
315 |
ttttgattgtttaggttaaaggtatcctcaatgttttccatgaacttcatct |
366 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
5179699 |
ttttgattgtttaggttaaaggtatcctcaatattttccatgaacttcatct |
5179750 |
T |
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