View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18645_high_1 (Length: 887)
Name: NF18645_high_1
Description: NF18645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18645_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 580; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 580; E-Value: 0
Query Start/End: Original strand, 14 - 696
Target Start/End: Original strand, 26968444 - 26969134
Alignment:
| Q |
14 |
gttaatgcaggtcctcgtcattggatttttaattaaacattgatctatactttaatcgaaaatccaaagacatcttttatttttgtagatgtttcataca |
113 |
Q |
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| T |
26968444 |
gttaatgcatgttctcgtcattggatttttaattaaacata-atctatacttcaatcttaaatccaaagacatcttttatttttgtagatgtttcataca |
26968542 |
T |
|
| Q |
114 |
gtccatataaaaaacactagatacatatatgaagagaaaagtaaaccaaatagtattgtttccatttaaacttaacaaaacaaccaaaaggtaaacaaac |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |
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| T |
26968543 |
atccatataaaaaacactagatacatatatgaagagaaaagtaaaccaaatagtattgtttccatataaacttaacaaagcaaccaaaaggtaaacaaac |
26968642 |
T |
|
| Q |
214 |
aagtttcatgattcatcacatcatgaatataact---------acaaatcacttctttttaatatcaaggagtccaacacgagtaaccccttcatcatcc |
304 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26968643 |
aagtttcatgattcatcacatcatgaatataacttgatgtactacaaatcacttctttttaatatcaaggagtccaacacgagtaaccccttcatcatcc |
26968742 |
T |
|
| Q |
305 |
aaaggtcccacatcattgaatgtctgaccggtcatctgatccgccgctttcagcctctccgccaccgctcctgttcgagtatcctccgttctgatcaccc |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26968743 |
aaaggtcccacatcattgaatgtctgaccggtcatctgatccgccgctttcagcctctccgccaccgctcctgttcgagtatcctccgttctgatcaccc |
26968842 |
T |
|
| Q |
405 |
cctcatttccacgcctccaagtttcctctccaaatcctttacgtccataatttccactttccattttcctccctgcttctttatctgcttcactcaacat |
504 |
Q |
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| T |
26968843 |
cctcatttccacgcctccaagtttcctctccaaatcctttacgtccataatttccactttccattttcctccctgcttctttatctgcttcactcaacat |
26968942 |
T |
|
| Q |
505 |
ttcctgcattatccatgccaaaattccacaaccactgatcaataaatatctcaaacatcaaaaacatatactaccataaattcaaatttgttaccttggt |
604 |
Q |
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|||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26968943 |
ttcctgcattatccatgcaaaaattccacaaccactaatcaataaatatctcaaacatcaaaaacatatactaccataaattcaaatttgttaccttggt |
26969042 |
T |
|
| Q |
605 |
cttgtcttttgcctctactgtcttttgcttagcagcctcagtggtttctgcagttttctgtttagcagcttccgctgtctctgcagttttct |
696 |
Q |
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||||||||||||||||||||||||||| |||||||| || | || |||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
26969043 |
cttgtcttttgcctctactgtcttttgtttagcagcttctgctgtctctgcagttttctgtttagcagcttctgctgtctctgcagttttct |
26969134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 651 - 887
Target Start/End: Original strand, 26969122 - 26969358
Alignment:
| Q |
651 |
tctgcagttttctgtttagcagcttccgctgtctctgcagttttctccttagcttcctctttcttgtcacccaagtaacccatagcccgtttcgccgcat |
750 |
Q |
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| T |
26969122 |
tctgcagttttctgtttagcagcttctgctgtctctgcagttttctgtttagcttcctctttcttgtcacccaagtaacccatagcccgtttcgccgcat |
26969221 |
T |
|
| Q |
751 |
caacagcagagtctttcatctcaccaatcttccatgctgtattatccttcccttccttcgccttctcagctgtataatccttatactcacccatcttatt |
850 |
Q |
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| T |
26969222 |
caacagcagagtccttcatctcaccaatcttccacgctgtattatccttcccttccttcgccttctcagctgtataatccttatactcacccatcttatt |
26969321 |
T |
|
| Q |
851 |
cagggtggcatctttcccttctttcgccttctcagcc |
887 |
Q |
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|| |||||||||||||||||||||||||||||||||| |
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| T |
26969322 |
catggtggcatctttcccttctttcgccttctcagcc |
26969358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 798 - 880
Target Start/End: Original strand, 26969335 - 26969417
Alignment:
| Q |
798 |
ttcccttccttcgccttctcagctgtataatccttatactcacccatcttattcagggtggcatctttcccttctttcgcctt |
880 |
Q |
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|||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||| ||||| || ||||| |
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| T |
26969335 |
ttcccttctttcgccttctcagccgtataatccttatactcacccatcttattcatggtagcatcttttccttcctttgcctt |
26969417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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