View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18645_high_16 (Length: 318)
Name: NF18645_high_16
Description: NF18645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18645_high_16 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 4599564 - 4599879
Alignment:
| Q |
1 |
cccgatttagatttagtttttaaaattaatgcctccgttgcattggcagcatacatggtggtgtagtaattgattccaataaaatcatatgacccaataa |
100 |
Q |
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| T |
4599564 |
cccgatttagatttagtttttaaaattaatgcctccgttgcattggcagcatacatggtggtgtagtaattgattccaataaaatcatatgacccaataa |
4599663 |
T |
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| Q |
101 |
gacttttagattgctcttcagtgaactttggtaaatctttcacgaaagacaccatgcttgctggatactctccggttgtcagtggctgtataaaccttca |
200 |
Q |
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| T |
4599664 |
gacttttagattgctcttcagtgaactttggtaaatctttcacgaaagacaccatgtttgctggatactctccggttgtcagtggctgtataaacctgca |
4599763 |
T |
|
| Q |
201 |
aacagataaagaagattttaaattaccgtcacaattttgtcgcgatccatggttgtcgtagaaacggtnnnnnnngtatagtcattaccatccaaacatg |
300 |
Q |
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| T |
4599764 |
aacagataaagaagattttaaattaccgtcacaattttgtcgtgatccatggttgtcgtagaaaaggtaaaaaaag--tagtcattaccatccaaacatg |
4599861 |
T |
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| Q |
301 |
aaatcaagggcgcgttcg |
318 |
Q |
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|||||||||||||||||| |
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| T |
4599862 |
aaatcaagggcgcgttcg |
4599879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 36 - 312
Target Start/End: Original strand, 4623927 - 4624207
Alignment:
| Q |
36 |
cgttgcattggcagcatacatggtggtgtagtaattgattccaataaaatcatatgacccaataagacttttagattgctcttcagtgaactttggtaa- |
134 |
Q |
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| T |
4623927 |
cgttgcattggcagcatacatgctggtgtagtaattgattccaataaaatcatatgacccaataagactcttagattgctctgcagtgaactttggtagc |
4624026 |
T |
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| Q |
135 |
--atctttcacgaaagacaccatgcttgctggatactctccggttgtcagtggctgtataaaccttcaaacagataaagaagattttaaat--taccgtc |
230 |
Q |
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| T |
4624027 |
ttatctcccacataagacaccaagcttgctggatactctcctgttgtcagtggctgtataaacctgcaaacagataaagaagattttaaattatacggtc |
4624126 |
T |
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| Q |
231 |
acaattttgtcgcgatccatggttgtcgtagaaacggtnnnnnnngtatagtcattaccatccaaacatgaaatcaagggcg |
312 |
Q |
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| T |
4624127 |
acaattttgtcgcgatccatggttgttgtagaaacggt-caaaaagtatagttgttaccatccaaacatgaaatcaagggcg |
4624207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 46 - 204
Target Start/End: Original strand, 25038130 - 25038291
Alignment:
| Q |
46 |
gcagcatacatggtggtgtagtaattgattccaataaaatcatatgacccaataagacttttagattgctcttcagtgaactttggtaa---atctttca |
142 |
Q |
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| T |
25038130 |
gcagcataattggaggtgtagtaattgattccaataaaatcaaatgagccaataagaatcttagattgctctctggtgaactttggtaaacgatttccca |
25038229 |
T |
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| Q |
143 |
cgaaagacaccatgcttgctggatactctccggttgtcagtggctgtataaaccttcaaaca |
204 |
Q |
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| T |
25038230 |
cataagacaccatgcttgatggatactctcctgttgtcagtggctgcataaacctacaaaca |
25038291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 42 - 204
Target Start/End: Original strand, 25017021 - 25017186
Alignment:
| Q |
42 |
attggcagcatacatggtggtgtagtaattgattccaataaaatcatatgacccaataagacttttagattgctcttcagtgaactttggtaaa-tcttt |
140 |
Q |
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| T |
25017021 |
attggcagcatatttggaggtgtagtaattgattccaataaaatcaaatgagccaataagcatcttagattgctctttggtgaactttggtaaacgattt |
25017120 |
T |
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| Q |
141 |
cacg--aaagacaccatgcttgctggatactctccggttgtcagtggctgtataaaccttcaaaca |
204 |
Q |
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| T |
25017121 |
cccgcaaaagacaccatgcttaatggatactctcctgtggtcaatggctgcataaacctgcaaaca |
25017186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 42 - 249
Target Start/End: Complemental strand, 18804874 - 18804667
Alignment:
| Q |
42 |
attggcagcatacatggtggtgtagtaattgattccaataaaatcatatgacccaataagacttttagattgctcttcagtgaactttggtaaatctttc |
141 |
Q |
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|||| |||||||| ||| |||||||||||| |||||||||||||| ||||||||||||||||| | | ||||||||| ||||||||||||||| || | |
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| T |
18804874 |
attgacagcatacgtggaggtgtagtaattaattccaataaaatcgtatgacccaataagactctcatattgctctttagtgaactttggtaatgtttcc |
18804775 |
T |
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| Q |
142 |
acgaaagacaccatgcttgctggatactctccggttgtcagtggctgtataaaccttcaaacagataaagaagattttaaattaccgtcacaattttgtc |
241 |
Q |
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| |||||||||||||||||| |||||||| ||||||||||| |||| |||||| |||||||||||||||||||||||||||| | | ||||| |||| |
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| T |
18804774 |
aaattagacaccatgcttgctgggtactctcctgttgtcagtggttgtaaaaacctgcaaacagataaagaagattttaaattactgccgcaattatgtc |
18804675 |
T |
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| Q |
242 |
gcgatcca |
249 |
Q |
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| |||||| |
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| T |
18804674 |
gtgatcca |
18804667 |
T |
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