View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18645_high_2 (Length: 788)
Name: NF18645_high_2
Description: NF18645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18645_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 459; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 10 - 510
Target Start/End: Original strand, 32531057 - 32531550
Alignment:
| Q |
10 |
tagattatactagactagatgagaatacaaatatcaaggttaatttatttccccattttcccctcttatgagatcttaaactagtactagcagataaact |
109 |
Q |
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| T |
32531057 |
tagattatactagactagatgagaatacaaatatcaaggttaatttatttccccattttcccctcgtatgagatcttaaactagtactagcagataaact |
32531156 |
T |
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| Q |
110 |
ataatctaagccaaaagccagaagttcttctgccacctggtgctgataaggtagccattattgccttggcttctcttccttactcctattgtcaagcact |
209 |
Q |
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| T |
32531157 |
ataatctaagccaaaagccagaagttcttctgccacctggtgctgataaggtagccattattgccttggcttctcttccttactcctattgtcaagcact |
32531256 |
T |
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| Q |
210 |
cagcattgttgatacagtactccacaaactcctctgtgctgctgcagctgctgctacttccacagagactgtaaacaaacagtaatgattaattacaaac |
309 |
Q |
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| T |
32531257 |
cagcattgttgatacagtactccacaaactcctctgtgctgctgcagctgctgctacttccacagagactgtaaacaaacagtaatgattaattacaaac |
32531356 |
T |
|
| Q |
310 |
actgaattttaaaaaattcaaaatacccaagtaagtagtaacaagagaaattttggaagtatgacatcaaaaggttgcaaaaattttaaaacaaaacaat |
409 |
Q |
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| T |
32531357 |
actgaattttaaaaaattcaaaataccca-------agcaacaagagaaattttggaagtatgaaatcaaaaggttgcaaaaattttaaaacaaaacaat |
32531449 |
T |
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| Q |
410 |
tggggtgatggaaactatgattaattaaagagattaattcaatttactattgtcaattagaggatttgaactctgtttacaagttcaagctctatacact |
509 |
Q |
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| T |
32531450 |
tggggtgatggaaactatgattaattaaagagattaattcaatttactattgtcaattagaggatttgaactctgtttacaatttcaagctctatacact |
32531549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 210; E-Value: 1e-114
Query Start/End: Original strand, 510 - 719
Target Start/End: Original strand, 32531578 - 32531787
Alignment:
| Q |
510 |
ttgcttgtgtttggatgataggactcttaccagctaaagaaagaagatggcttcttttggccaagtaccaggatagagacctccaatttctttacctggc |
609 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32531578 |
ttgcttgtgtttggatgataggactcttaccagctaaagaaagaagatggcttcttttggccaagtaccaggatagagacctccaatttctttacctggc |
32531677 |
T |
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| Q |
610 |
tcatcactgtggccagtttaggtccttgaattacaagtgcttccacttccacctatgtcagaccataacattatcagtaacctttatctttgttttgagg |
709 |
Q |
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| T |
32531678 |
tcatcactgtggccagtttaggtccttgaattacaagtgcttccacttccacctatgtcagaccataacattatcagtaacctttatctttgttttgagg |
32531777 |
T |
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| Q |
710 |
agaaggggac |
719 |
Q |
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| T |
32531778 |
agaaggggac |
32531787 |
T |
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