View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18645_high_22 (Length: 238)
Name: NF18645_high_22
Description: NF18645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18645_high_22 |
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Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 37960777 - 37960993
Alignment:
| Q |
1 |
tatcagtaacccatttctttaacttctggacttgttcatagctcaacactaaagttgttcttatcttgttaacataagaatctcgaaccaaacccgcaaa |
100 |
Q |
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| T |
37960777 |
tatcagtaacccatttctttaacttctggacttgttcatagctcaacactaaagctgttcttatcttgttaacataagaatctcgaaccaaacccgcaaa |
37960876 |
T |
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| Q |
101 |
ttccatttcatttgattcagaatcttctaattcttgcaagtatacaagtttaagaccatttggatctttaactctatctctttcatgtgaaggaagatca |
200 |
Q |
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| T |
37960877 |
ttccatttcatttgattcagaatcttctaattcttgcaagtatacaagtttaagaccatttggatctttaactctatctctttcatgtgaaggaagatca |
37960976 |
T |
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| Q |
201 |
agaggcagagagtattc |
217 |
Q |
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|||||| |||||||||| |
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| T |
37960977 |
agaggcggagagtattc |
37960993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 171 - 217
Target Start/End: Complemental strand, 37915281 - 37915235
Alignment:
| Q |
171 |
actctatctctttcatgtgaaggaagatcaagaggcagagagtattc |
217 |
Q |
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| T |
37915281 |
actctatctctttcatgggaaggaagatcaagaggcggagagtattc |
37915235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 213
Target Start/End: Complemental strand, 3783405 - 3783348
Alignment:
| Q |
159 |
tttggatctttaactctatctctttcatgtgaagg---aagatcaagaggcagagagt |
213 |
Q |
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| T |
3783405 |
tttgggtctctaactctatctctttcatgtgaaggaagaagatcaagaggcagagagt |
3783348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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