View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18645_high_23 (Length: 237)
Name: NF18645_high_23
Description: NF18645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18645_high_23 |
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| [»] chr4 (7 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 7 - 237
Target Start/End: Complemental strand, 4600353 - 4600122
Alignment:
| Q |
7 |
attgtgtcacatattttcattcaaaaaataataaattgatgatagagcattatgacannnnnnnatccacatggttgatcc-tcttagtggtataaggtt |
105 |
Q |
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| T |
4600353 |
attgtgtcacatattctcattcaaaaaataataaattgatgatagagcattatgacatttttttatccatatagttgatccctcttagtgatataaggtt |
4600254 |
T |
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| Q |
106 |
tgattgtttaatttctacgtgcagaaatgattttaaggactttgtggagatatgcttccaagaatttggagatagagtaaagcattgggttacttttaac |
205 |
Q |
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| T |
4600253 |
tgattgtttaatttctacgtgcagaaatgattttaaggactttgtggagatatgcttccaagaatttggagatagagtaaagcattgggttacttttaat |
4600154 |
T |
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| Q |
206 |
gagccattctcttactgtttgagtacatcaca |
237 |
Q |
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| T |
4600153 |
gagccattctcttattgtttgagtacatcaca |
4600122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 105 - 235
Target Start/End: Complemental strand, 4624502 - 4624372
Alignment:
| Q |
105 |
ttgattgtttaatttctacgtgcagaaatgattttaaggactttgtggagatatgcttccaagaatttggagatagagtaaagcattgggttacttttaa |
204 |
Q |
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| T |
4624502 |
ttgattgtttaatttctatatgcagaaaagattttaaggactttgtggatatatgcttcaaggaatttggagacagtgtaaagcattgggttacttttaa |
4624403 |
T |
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| Q |
205 |
cgagccattctcttactgtttgagtacatca |
235 |
Q |
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| T |
4624402 |
tgagccattctcttacactttgagtacatca |
4624372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 226
Target Start/End: Complemental strand, 25038822 - 25038721
Alignment:
| Q |
125 |
tgcagaaatgattttaaggactttgtggagatatgcttccaagaatttggagatagagtaaagcattgggttacttttaacgagccattctcttactgtt |
224 |
Q |
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| T |
25038822 |
tgcagaaatgattttcaagactatgcagagctatgcttcaaggaattcggagatagagtgaagcattggattaccttcaatgagccacactcttacagtt |
25038723 |
T |
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| Q |
225 |
tg |
226 |
Q |
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|| |
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| T |
25038722 |
tg |
25038721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 212
Target Start/End: Complemental strand, 25189396 - 25189342
Alignment:
| Q |
158 |
tgcttccaagaatttggagatagagtaaagcattgggttacttttaacgagccat |
212 |
Q |
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| T |
25189396 |
tgcttcaaggaatttggagatagagtgaagtactgggttacttttaacgaaccat |
25189342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 198
Target Start/End: Complemental strand, 25017715 - 25017642
Alignment:
| Q |
125 |
tgcagaaatgattttaaggactttgtggagatatgcttccaagaatttggagatagagtaaagcattgggttac |
198 |
Q |
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| T |
25017715 |
tgcagaaatgattttcaggactatgccgagctatgcttcaaggaatttggagaccgagtgaagcattggattac |
25017642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 212
Target Start/End: Complemental strand, 25160213 - 25160168
Alignment:
| Q |
167 |
gaatttggagatagagtaaagcattgggttacttttaacgagccat |
212 |
Q |
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| T |
25160213 |
gaatttggtgatagagtcaagtattgggttactttgaacgagccat |
25160168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 4624561 - 4624525
Alignment:
| Q |
23 |
tcattcaaaaaataataaattgatgatagagcattat |
59 |
Q |
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| T |
4624561 |
tcattcaagaaataataaattgaggatagagcattat |
4624525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 103 - 221
Target Start/End: Original strand, 18804057 - 18804175
Alignment:
| Q |
103 |
gtttgattgtttaatttctacgtgcagaaatgattttaaggactttgtggagatatgcttccaagaatttggagatagagtaaagcattgggttactttt |
202 |
Q |
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|||| |||||||||||||||| |||||| ||||||| ||| |||||||||| |||||||| | ||||||||||| |||||||| |||||| ||||| || |
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| T |
18804057 |
gtttaattgtttaatttctacatgcagagatgatttcaagagctttgtggaggtatgcttcgaggaatttggagacagagtaaatcattggattactctt |
18804156 |
T |
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| Q |
203 |
aacgagccattctcttact |
221 |
Q |
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| T |
18804157 |
aatgagccatacttttact |
18804175 |
T |
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