View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18645_low_10 (Length: 475)
Name: NF18645_low_10
Description: NF18645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18645_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 17 - 436
Target Start/End: Original strand, 1432023 - 1432426
Alignment:
| Q |
17 |
catcacacaaacaactctctggaccagagttcgaacccggctgaaggtgtctagtctaataatattggtattgtcagttgagctaggccttagcatccac |
116 |
Q |
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| T |
1432023 |
catcacacacaaaactctctggaccagagttcgaacccggctgaaggtgtctagtctaataatattggtattgtcagttgagctaggccttagcatccac |
1432122 |
T |
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| Q |
117 |
tggttgccctttagctttatccgtattaggcatatgtttgattgaaaaataaacttcacattaaacttggagtagtagcttttgtaatattcaatccaaa |
216 |
Q |
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| T |
1432123 |
tggttgccctttagctttatccgtattaggcatatgtttgattgaaaaataaacttcacattaaacttggagtagtagcttttgtaatattcaatc---- |
1432218 |
T |
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| Q |
217 |
tattctcnnnnnnngctaaataagataggatcatatgattgaagtattttagtgatattcatatacgatgttgatgttgtgtgcatcactagattaggtt |
316 |
Q |
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| T |
1432219 |
--tt----------gctaaataagataggatcatatgattgaagtattttagtgatattcatatacgatgttgatgttgtgtgcatcactagattaggtt |
1432306 |
T |
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| Q |
317 |
gtttcttgattgttaagtgcttaatctcaaacgtcaccgattgaacagaattggtgatgataatactttgtgattgtgtaagacttcataattatattag |
416 |
Q |
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| T |
1432307 |
gtttcttgattgttaagtgcttaatctcaaacgtcaccgattgaacagaattggtgatgataatactttgtgattgtgtaagacttcataattatattag |
1432406 |
T |
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| Q |
417 |
agaatggcttttcaatatgg |
436 |
Q |
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| T |
1432407 |
agaatggcttttcaatatgg |
1432426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 238 - 335
Target Start/End: Original strand, 1438080 - 1438175
Alignment:
| Q |
238 |
aagataggatcatatgattgaagtattttagtgatattcatatacgatgttgatgttgtgtgcatcactagattaggttgtttcttgattgttaagtg |
335 |
Q |
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| T |
1438080 |
aagataggatcatatgattgaagaattttagtaaatttcagatatagtgatggtgttctg--catcactagattaggttgtttcttgattgttcagtg |
1438175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 43 - 108
Target Start/End: Complemental strand, 32003189 - 32003122
Alignment:
| Q |
43 |
gagttcgaacccggctgaaggtgtctagtctaataatatt--ggtattgtcagttgagctaggcctta |
108 |
Q |
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| T |
32003189 |
gagttcgaacctgggtgaaggtgtccagcctaacaatatctaggtattgtcagttgagctaggcctta |
32003122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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