View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18645_low_11 (Length: 460)
Name: NF18645_low_11
Description: NF18645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18645_low_11 |
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| [»] chr7 (2 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 142 - 460
Target Start/End: Complemental strand, 30107521 - 30107202
Alignment:
| Q |
142 |
catgggttgcaaatgattagtatttgatttgagaaagaaatttaatgcacaatttggttattgtgtacatgatgaggggaaaacacagcatgctcatgtt |
241 |
Q |
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| T |
30107521 |
catgggttgcaaattattagtatttgatttgagaaagaaatttaatgcacaatttggttattgtgtacatgatgaggtgaaaacacagcatgctcatgtt |
30107422 |
T |
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| Q |
242 |
aattttctgctataagaagatgtg-gtcaattttaagctgatataagtcttgaagaggttggatagctcaattcgtttgagctaaaggttgaaggagttg |
340 |
Q |
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| T |
30107421 |
aattttctgctataagatgttgtcagtcaattttaagctgatataagtcttgaagaggttggatagctcaattcgtttgagctaaaggttgaaggagttg |
30107322 |
T |
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| Q |
341 |
aagggctcgggtttaacctagcaagttaacaacaactactccctccatctcaatttaattgtcacatttgaattttacatgattcttaagaaaataatta |
440 |
Q |
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| T |
30107321 |
aagggctcgggtttaacctagcaagttaacaacaactactccctccatctcaatttagttgtcacatttgaattttacatgattcttaagaaaataatta |
30107222 |
T |
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| Q |
441 |
gtttagttgattttaatggt |
460 |
Q |
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| T |
30107221 |
gtttagttgattttaatggt |
30107202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 459
Target Start/End: Original strand, 30546318 - 30546397
Alignment:
| Q |
380 |
tccctccatctcaatttaattgtcacatttgaattttacatgattcttaagaaaataattagtttagttgattttaatgg |
459 |
Q |
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| T |
30546318 |
tccctccgtctcaatttaattgtcacgtttggattgtacgtggttcctaagaaaatgattagattggttgagttcaatgg |
30546397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 395 - 460
Target Start/End: Original strand, 16319875 - 16319940
Alignment:
| Q |
395 |
ttaattgtcacatttgaattttacatgattcttaagaaaataattagtttagttgattttaatggt |
460 |
Q |
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| T |
16319875 |
ttaattgtcacgtttaagttgtgcgtgattcttaagaaaataattagttgagttgattttattggt |
16319940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 388 - 460
Target Start/End: Complemental strand, 6699046 - 6698974
Alignment:
| Q |
388 |
tctcaatttaattgtcacatttgaattttacatgattcttaagaaaataattagtttagttgattttaatggt |
460 |
Q |
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| T |
6699046 |
tctcaaattaataatctcatttgaattttacatggttattaagaaaataattaatagtgttgattttaatggt |
6698974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 423 - 460
Target Start/End: Original strand, 15809982 - 15810019
Alignment:
| Q |
423 |
ttcttaagaaaataattagtttagttgattttaatggt |
460 |
Q |
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| T |
15809982 |
ttcttaagaaaatgattagttcagttgattttaatggt |
15810019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 460
Target Start/End: Complemental strand, 11642304 - 11642244
Alignment:
| Q |
400 |
tgtcacatttgaattttacatgattcttaagaaaataattagtttagttgattttaatggt |
460 |
Q |
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| T |
11642304 |
tgtctcatttgagttttacatggttattaagaaaatgattaatattgttgattttaatggt |
11642244 |
T |
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