View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18645_low_12 (Length: 425)
Name: NF18645_low_12
Description: NF18645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18645_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 378; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 406
Target Start/End: Original strand, 13554266 - 13554671
Alignment:
| Q |
1 |
atacataagcttgttccaggagtatgtctaacaattatggaccttcaaaaacatgattcatatgattaacgatactcggtaaagttcaaatcgatcttta |
100 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
13554266 |
atacataagctcgttccaggagtatgtctaacaattatggaccttcaaaaacatgattcatgtgattaacgatactcggtaaagttcaaatcgatcttta |
13554365 |
T |
|
| Q |
101 |
aatgaaagagtttttagttaaactttacttgtatcgaaaaaagaattatataaataattacaatggttgtattgcagatggcaaaaccaactttgtgcta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
13554366 |
aatgaaagagtttttagttaaactttacttgtatcgaaaaaagaattatataaataattataatggttgtattgcagatggcaaaaccaactttgtgcta |
13554465 |
T |
|
| Q |
201 |
cacaaattagatgcagtagatgaggcaaactttggatacaactacagcttagtaggaggaacaggattggatgaaagtctagagaaagttgaattcgaga |
300 |
Q |
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| T |
13554466 |
cacaaattagatgcagtagatgaggcaaactttggatacaactatagcttagtaggaggaacaggattggatgaaagtctagagaaagttgaattcgaga |
13554565 |
T |
|
| Q |
301 |
caaaaattgtggctggctctgatggtggatccattgcaaagattacagtgaaataccacaccaaaggtgatgcaactctatctgatgcagtgcgtgatga |
400 |
Q |
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| T |
13554566 |
caaaaattgtggctggctctgatggtggatccattgctaagattacagttaaatatcacaccaaaggtgatgcaactctatctgatgcagtgcgtgatga |
13554665 |
T |
|
| Q |
401 |
gactaa |
406 |
Q |
| |
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|||||| |
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| T |
13554666 |
gactaa |
13554671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 151 - 406
Target Start/End: Original strand, 13530694 - 13530949
Alignment:
| Q |
151 |
taaataattacaatggttgtattgcagatggcaaaaccaactttgtgctacacaaattagatgcagtagatgaggcaaactttggatacaactacagctt |
250 |
Q |
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|||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |
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| T |
13530694 |
taaataattataatggttatattgcagatggcaaaaccaactttgtgctacacaaattagatgcagtagatgaggcaaactatggatataactacagctt |
13530793 |
T |
|
| Q |
251 |
agtaggaggaacaggattggatgaaagtctagagaaagttgaattcgagacaaaaattgtggctggctctgatggtggatccattgcaaagattacagtg |
350 |
Q |
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||||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||| |||||| ||||| |
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| T |
13530794 |
agtaggaggaacagggttggatgaaagtttagagaaagttgaattcgagacaaatattgttgctgggtctgatggtggatccattgttaagatttcagtg |
13530893 |
T |
|
| Q |
351 |
aaataccacaccaaaggtgatgcaactctatctgatgcagtgcgtgatgagactaa |
406 |
Q |
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| T |
13530894 |
aaatatcacaccaaaggtgatgcagttctatctgatgcagtacgtgaggagactaa |
13530949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 163 - 406
Target Start/End: Original strand, 13537569 - 13537812
Alignment:
| Q |
163 |
atggttgtattgcagatggcaaaaccaactttgtgctacacaaattagatgcagtagatgaggcaaactttggatacaactacagcttagtaggaggaac |
262 |
Q |
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|||||||||||| || |||||||||| ||| |||||||||||||||||| ||| | ||||| |||||||| ||||||||||| ||| | ||||||||||| |
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| T |
13537569 |
atggttgtattgtaggtggcaaaaccgactatgtgctacacaaattagaagcaatggatgaagcaaacttgggatacaactatagcattgtaggaggaac |
13537668 |
T |
|
| Q |
263 |
aggattggatgaaagtctagagaaagttgaattcgagacaaaaattgtggctggctctgatggtggatccattgcaaagattacagtgaaataccacacc |
362 |
Q |
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||| |||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |
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| T |
13537669 |
agggttggatgaaagtttagaaaaagttgaattcgagacaagtattgtggctggctctgatggtggatccattgttaagatttcagtgaaataccacacc |
13537768 |
T |
|
| Q |
363 |
aaaggtgatgcaactctatctgatgcagtgcgtgatgagactaa |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
13537769 |
aaaggtgatgcaactctatctgatgcagtgcgtgatgaaactaa |
13537812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 183 - 406
Target Start/End: Original strand, 13541630 - 13541853
Alignment:
| Q |
183 |
aaaaccaactttgtgctacacaaattagatgcagtagatgaggcaaactttggatacaactacagcttagtaggaggaacaggattggatgaaagtctag |
282 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||| | |||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||| ||| |
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| T |
13541630 |
aaaaccgactttgtgctacacaaattagaagcaatggatgaggcaaacttgggatacaactatagcatagtaggaggaacaggattggatgaaagtttag |
13541729 |
T |
|
| Q |
283 |
agaaagttgaattcgagacaaaaattgtggctggctctgatggtggatccattgcaaagattacagtgaaataccacaccaaaggtgatgcaactctatc |
382 |
Q |
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| T |
13541730 |
agaaagttgaatttgagacaaatattgtggctggatctgatggtggatccattgttaagatttcagtgaaatatcacaccaaaggtgatgcagttctatc |
13541829 |
T |
|
| Q |
383 |
tgatgcagtgcgtgatgagactaa |
406 |
Q |
| |
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||| || || ||||| || ||||| |
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| T |
13541830 |
tgaagctgtacgtgaggaaactaa |
13541853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 13530357 - 13530516
Alignment:
| Q |
1 |
atacataagcttgttccaggagtatgtctaacaattatggaccttcaaaaaca---tgattcatatgattaacgatactcggtaaagttcaaatcgatct |
97 |
Q |
| |
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|||||||||||||| ||| | | |||||||| ||||||||||||||||||| | ||||||| ||||| | || ||| ||||||||||||| |||||| |
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| T |
13530357 |
atacataagcttgtaccaagggcatgtctaataattatggaccttcaaaaaaaaaatgattcaggtgattcaggacacttggtaaagttcaaaacgatct |
13530456 |
T |
|
| Q |
98 |
ttaaatgaaagagtttttagttaaactttacttgtatcgaaaaaagaattatataaataa |
157 |
Q |
| |
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|||| ||||||||||||||| ||||| ||||| ||| |||||||||| ||||||||||| |
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| T |
13530457 |
ttaaccgaaagagtttttagtcaaactatacttatattgaaaaaagaactatataaataa |
13530516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 321 - 373
Target Start/End: Original strand, 13485707 - 13485759
Alignment:
| Q |
321 |
gatggtggatccattgcaaagattacagtgaaataccacaccaaaggtgatgc |
373 |
Q |
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||||| ||||||||||||||| |||| ||||||||| ||||||||||||||| |
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| T |
13485707 |
gatggaggatccattgcaaagcttactgtgaaatacttcaccaaaggtgatgc |
13485759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 321 - 373
Target Start/End: Original strand, 13492146 - 13492198
Alignment:
| Q |
321 |
gatggtggatccattgcaaagattacagtgaaataccacaccaaaggtgatgc |
373 |
Q |
| |
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||||| ||||||||||||||| |||| ||||||||| ||||||||||||||| |
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|
| T |
13492146 |
gatggaggatccattgcaaagcttactgtgaaatacttcaccaaaggtgatgc |
13492198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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