View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18645_low_13 (Length: 417)
Name: NF18645_low_13
Description: NF18645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18645_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Original strand, 47212796 - 47213224
Alignment:
| Q |
1 |
cttctctggttggatcttgttcatgtcaacttttgtctttttccttgtccctgagacaaagaatgtccctattgaagagatgacacaaagagtgtggaag |
100 |
Q |
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| T |
47212796 |
cttctctggttggatcttgttcatgtcaacttttgtctttttccttgtccctgagacaaagaatgtccctattgaagagatgacacaaagagtgtggaag |
47212895 |
T |
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| Q |
101 |
cagcattggttttggaagaggtttgttgaaaatgattatattgaagatgagaaagtaactggtggaaattcccctagcagaaatgatcttgtttctcagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47212896 |
cagcattggttttggaagaggtttgttgaaaatgattatattgaagatgagaaagtaactggtggaaattcccctagcagaaatgatcttgtttctcagt |
47212995 |
T |
|
| Q |
201 |
tgtaaattaaaggaatttctagtactaagttgttttgtcaaataaatgcatg-------------gttattacagctaaccagactttatcattcccatt |
287 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
47212996 |
tgtaaattaaaggaatttctagtactaagttgttttgtcaaataaatgcatggttagattcgtttgttattacagctaaccagactttatcattcccatt |
47213095 |
T |
|
| Q |
288 |
gtgttaagtagtttttgcttgtaacattgtagtgtttgtaagttatattactatgtttcttatg-------------ttcccaatgtattattatttgtc |
374 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
47213096 |
gtgttaagtagtttttgcttgtaacattgtaatgtttgtaagttatattactatgtttcttatgttcccatttatatttcccaatgtattattatttgtc |
47213195 |
T |
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| Q |
375 |
ttctgtttaaattagttttggttattcat |
403 |
Q |
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| T |
47213196 |
ttctgtttaaattagttttggttattcat |
47213224 |
T |
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