View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18645_low_14 (Length: 361)
Name: NF18645_low_14
Description: NF18645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18645_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 18 - 343
Target Start/End: Original strand, 19094769 - 19095092
Alignment:
| Q |
18 |
aatagcgaaccacttcatctctcttcatgatggcatgatgcgtggctcataacacgctttgcattttaagtattggttgtccatcttgaatccccttctg |
117 |
Q |
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| T |
19094769 |
aatagcgaaccacttcatctctcttcatgatggcatgatgcgtggctcataacacgctttgcattttaagtattggttgtccatcttgaatccccttctg |
19094868 |
T |
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| Q |
118 |
attgcacaacatgtggcttgtagcatgcatcacgcttcttcctgtggctgactcatctataattcttctttccttatcccatttcgcctcatcgaaacat |
217 |
Q |
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| T |
19094869 |
attgcacaacatgtggcttgtagcatgcatcactcttcttctagtggctgactcatctataattcttctttccttatcccattttgcctcatcgaaacgt |
19094968 |
T |
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| Q |
218 |
tcatagtgattatatatgctaagaaatcacttttaatattcttgtcaaaagtataacacacgaccacgaaattgtctagtttgaatgatttgacatgttt |
317 |
Q |
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| T |
19094969 |
tcatagtgattatatatcctaagaaatcacttttaatattcttgtcaaaagtata--acacgaccacgaaattgtctagtttgaatgatttgacatgttt |
19095066 |
T |
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| Q |
318 |
caaggtcttgttttcatttttcttgt |
343 |
Q |
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| T |
19095067 |
caaggtcttgttttcatttttcttgt |
19095092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 141 - 214
Target Start/End: Complemental strand, 9830135 - 9830062
Alignment:
| Q |
141 |
catgcatcacgcttcttcctgtggctgactcatctataattcttctttccttatcccatttcgcctcatcgaaa |
214 |
Q |
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| T |
9830135 |
catgcatcacgcttcttccaatggttgactcatttgtgatgcttcattccttatcgcatttcgcctcaccgaaa |
9830062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 323
Target Start/End: Complemental strand, 23055241 - 23055205
Alignment:
| Q |
287 |
aattgtctagtttgaatgatttgacatgtttcaaggt |
323 |
Q |
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|||| ||| |||||||||||||||||||||||||||| |
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| T |
23055241 |
aattatctggtttgaatgatttgacatgtttcaaggt |
23055205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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