View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18645_low_15 (Length: 340)

Name: NF18645_low_15
Description: NF18645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18645_low_15
NF18645_low_15
[»] chr5 (1 HSPs)
chr5 (86-340)||(3424383-3424636)
[»] scaffold0055 (9 HSPs)
scaffold0055 (10-86)||(14994-15070)
scaffold0055 (10-86)||(40088-40164)
scaffold0055 (10-86)||(49336-49412)
scaffold0055 (10-86)||(64959-65035)
scaffold0055 (10-86)||(73222-73298)
scaffold0055 (10-86)||(26524-26600)
scaffold0055 (10-86)||(30993-31069)
scaffold0055 (10-86)||(60650-60726)
scaffold0055 (10-86)||(5857-5933)
[»] scaffold0052 (9 HSPs)
scaffold0052 (10-86)||(15046-15122)
scaffold0052 (10-86)||(23861-23937)
scaffold0052 (10-86)||(32039-32115)
scaffold0052 (10-86)||(36893-36969)
scaffold0052 (10-86)||(46243-46319)
scaffold0052 (14-86)||(60934-61006)
scaffold0052 (10-86)||(64996-65072)
scaffold0052 (10-86)||(69465-69541)
scaffold0052 (10-86)||(78602-78678)
[»] scaffold0021 (2 HSPs)
scaffold0021 (10-86)||(61467-61543)
scaffold0021 (12-83)||(89361-89432)
[»] chr1 (1 HSPs)
chr1 (26-86)||(12592025-12592085)
[»] chr2 (1 HSPs)
chr2 (10-76)||(5028154-5028220)


Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 86 - 340
Target Start/End: Complemental strand, 3424636 - 3424383
Alignment:
Q  86 gacctttcatcggaatcaaatcggtccaaattcaaatttgttattgtgaaattattgtaaaataaaaatttataattttttgaatcggtccaatcttaat 185  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  3424636 gacctttcatctgaatcaaattggtccaaattcaaatttgttattgtgaaattattgtaaaataaaaatttataattttttgaatcg-tccaatcttaat 3424538  T
Q  186 cggatagaaccaatgtcgagcagaaatctgaatcaaatgaaaagataccaatccatgaacatcaaaacctcactgtttagggatgatgaggctattattt 285  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  3424537 cggatagaaccaatgtcgagcggaaatctgaatcgaatgaaaagataccaatccatgaacatcaacacctcactgtttagggatgatgaggctattattt 3424438  T
Q  286 gtcaggtcactgctggaaaattcgggatcttgcagcaagcctcaaaaccaacctc 340  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  3424437 gtcaggtcactgctggaaaattcgggatcttgcagcaagcctaaaaaccaacctc 3424383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055 (Bit Score: 53; Significance: 2e-21; HSPs: 9)
Name: scaffold0055
Description:

Target: scaffold0055; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 86
Target Start/End: Original strand, 14994 - 15070
Alignment:
Q  10 agatgaaaaggacgttaaaaagagagtcaaagaggactcgacattgtcgggagggaagcggatgggggccggcgatg 86  Q
    ||||||||||||| || |||||||||||||||||  || || |||||||||||||||||||||||||||||||||||    
T  14994 agatgaaaaggactttgaaaagagagtcaaagagtgcttgaaattgtcgggagggaagcggatgggggccggcgatg 15070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 86
Target Start/End: Complemental strand, 40164 - 40088
Alignment:
Q  10 agatgaaaaggacgttaaaaagagagtcaaagaggactcgacattgtcgggagggaagcggatgggggccggcgatg 86  Q
    ||||||||||||| || |||||||||||||||||  || || |||||||||||||||||||||||||||||||||||    
T  40164 agatgaaaaggactttgaaaagagagtcaaagagtgcttgaaattgtcgggagggaagcggatgggggccggcgatg 40088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 86
Target Start/End: Complemental strand, 49412 - 49336
Alignment:
Q  10 agatgaaaaggacgttaaaaagagagtcaaagaggactcgacattgtcgggagggaagcggatgggggccggcgatg 86  Q
    ||||||||||||| || |||||||||||||||||  || || |||||||||||||||||||||||||||||||||||    
T  49412 agatgaaaaggactttgaaaagagagtcaaagagtgcttgaaattgtcgggagggaagcggatgggggccggcgatg 49336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 86
Target Start/End: Complemental strand, 65035 - 64959
Alignment:
Q  10 agatgaaaaggacgttaaaaagagagtcaaagaggactcgacattgtcgggagggaagcggatgggggccggcgatg 86  Q
    ||||||||||||| || |||||||||||||||||  || || |||||||||||||||||||||||||||||||||||    
T  65035 agatgaaaaggactttgaaaagagagtcaaagagtgcttgaaattgtcgggagggaagcggatgggggccggcgatg 64959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 86
Target Start/End: Original strand, 73222 - 73298
Alignment:
Q  10 agatgaaaaggacgttaaaaagagagtcaaagaggactcgacattgtcgggagggaagcggatgggggccggcgatg 86  Q
    ||||||||||||| || |||||||||||||||||  || || |||||||||||||||||||||||||||||||||||    
T  73222 agatgaaaaggactttgaaaagagagtcaaagagtgcttgaaattgtcgggagggaagcggatgggggccggcgatg 73298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 10 - 86
Target Start/End: Original strand, 26524 - 26600
Alignment:
Q  10 agatgaaaaggacgttaaaaagagagtcaaagaggactcgacattgtcgggagggaagcggatgggggccggcgatg 86  Q
    ||||||||||||| || |||||||||| ||||||  || || |||||||||||||||||||||||||||||||||||    
T  26524 agatgaaaaggactttgaaaagagagttaaagagtgcttgaaattgtcgggagggaagcggatgggggccggcgatg 26600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 10 - 86
Target Start/End: Complemental strand, 31069 - 30993
Alignment:
Q  10 agatgaaaaggacgttaaaaagagagtcaaagaggactcgacattgtcgggagggaagcggatgggggccggcgatg 86  Q
    ||||||||||||| || |||||||||||||||||  || || ||||||||||||||||||||||||||||| |||||    
T  31069 agatgaaaaggactttgaaaagagagtcaaagagtgcttgaaattgtcgggagggaagcggatgggggccgacgatg 30993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 10 - 86
Target Start/End: Complemental strand, 60726 - 60650
Alignment:
Q  10 agatgaaaaggacgttaaaaagagagtcaaagaggactcgacattgtcgggagggaagcggatgggggccggcgatg 86  Q
    ||||||||||||| || |||||||||||||||||  || || ||||||||||||||||||||||||||||| |||||    
T  60726 agatgaaaaggactttgaaaagagagtcaaagagtgcttgaaattgtcgggagggaagcggatgggggccgacgatg 60650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 86
Target Start/End: Original strand, 5857 - 5933
Alignment:
Q  10 agatgaaaaggacgttaaaaagagagtcaaagaggactcgacattgtcgggagggaagcggatgggggccggcgatg 86  Q
    ||||||||||||| || |||||||| ||||||||  || || ||||||||||||||||| |||||||||||||||||    
T  5857 agatgaaaaggactttgaaaagagactcaaagagtgcttgaaattgtcgggagggaagcagatgggggccggcgatg 5933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052 (Bit Score: 53; Significance: 2e-21; HSPs: 9)
Name: scaffold0052
Description:

Target: scaffold0052; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 86
Target Start/End: Complemental strand, 15122 - 15046
Alignment:
Q  10 agatgaaaaggacgttaaaaagagagtcaaagaggactcgacattgtcgggagggaagcggatgggggccggcgatg 86  Q
    ||||||||||||| || |||||||||||||||||  || || |||||||||||||||||||||||||||||||||||    
T  15122 agatgaaaaggactttgaaaagagagtcaaagagtgcttgaaattgtcgggagggaagcggatgggggccggcgatg 15046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 86
Target Start/End: Complemental strand, 23937 - 23861
Alignment:
Q  10 agatgaaaaggacgttaaaaagagagtcaaagaggactcgacattgtcgggagggaagcggatgggggccggcgatg 86  Q
    ||||||||||||| || |||||||||||||||||  || || |||||||||||||||||||||||||||||||||||    
T  23937 agatgaaaaggactttgaaaagagagtcaaagagtgcttgaaattgtcgggagggaagcggatgggggccggcgatg 23861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 86
Target Start/End: Original strand, 32039 - 32115
Alignment:
Q  10 agatgaaaaggacgttaaaaagagagtcaaagaggactcgacattgtcgggagggaagcggatgggggccggcgatg 86  Q
    ||||||||||||| || |||||||||||||||||  || || |||||||||||||||||||||||||||||||||||    
T  32039 agatgaaaaggactttgaaaagagagtcaaagagtgcttgaaattgtcgggagggaagcggatgggggccggcgatg 32115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 86
Target Start/End: Original strand, 36893 - 36969
Alignment:
Q  10 agatgaaaaggacgttaaaaagagagtcaaagaggactcgacattgtcgggagggaagcggatgggggccggcgatg 86  Q
    ||||||||||||| || |||||||||||||||||  || || |||||||||||||||||||||||||||||||||||    
T  36893 agatgaaaaggactttgaaaagagagtcaaagagtgcttgaaattgtcgggagggaagcggatgggggccggcgatg 36969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 10 - 86
Target Start/End: Complemental strand, 46319 - 46243
Alignment:
Q  10 agatgaaaaggacgttaaaaagagagtcaaagaggactcgacattgtcgggagggaagcggatgggggccggcgatg 86  Q
    ||||||||||||| || |||||||||||||||||  || || ||||||||||||||||||||||||||||| |||||    
T  46319 agatgaaaaggactttgaaaagagagtcaaagagtgcttgaaattgtcgggagggaagcggatgggggccgacgatg 46243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 61006 - 60934
Alignment:
Q  14 gaaaaggacgttaaaaagagagtcaaagaggactcgacattgtcgggagggaagcggatgggggccggcgatg 86  Q
    ||||||||| || |||||||||||||||||  || || |||||||||||||||||||||||||||||||||||    
T  61006 gaaaaggactttgaaaagagagtcaaagagtgcttgaaattgtcgggagggaagcggatgggggccggcgatg 60934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 10 - 86
Target Start/End: Original strand, 64996 - 65072
Alignment:
Q  10 agatgaaaaggacgttaaaaagagagtcaaagaggactcgacattgtcgggagggaagcggatgggggccggcgatg 86  Q
    ||||||||||||| || |||||||||||||||||  || || ||||||||||||||||||||||||||||| |||||    
T  64996 agatgaaaaggactttgaaaagagagtcaaagagtgcttgaaattgtcgggagggaagcggatgggggccgacgatg 65072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 10 - 86
Target Start/End: Complemental strand, 69541 - 69465
Alignment:
Q  10 agatgaaaaggacgttaaaaagagagtcaaagaggactcgacattgtcgggagggaagcggatgggggccggcgatg 86  Q
    ||||||||||||| || |||||||||| ||||||  || || |||||||||||||||||||||||||||||||||||    
T  69541 agatgaaaaggactttgaaaagagagttaaagagtgcttgaaattgtcgggagggaagcggatgggggccggcgatg 69465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 86
Target Start/End: Complemental strand, 78678 - 78602
Alignment:
Q  10 agatgaaaaggacgttaaaaagagagtcaaagaggactcgacattgtcgggagggaagcggatgggggccggcgatg 86  Q
    ||||||||||||| || |||||||| ||||||||  || || ||||||||||||||||| |||||||||||||||||    
T  78678 agatgaaaaggactttgaaaagagactcaaagagtgcttgaaattgtcgggagggaagcagatgggggccggcgatg 78602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 10 - 86
Target Start/End: Complemental strand, 61543 - 61467
Alignment:
Q  10 agatgaaaaggacgttaaaaagagagtcaaagaggactcgacattgtcgggagggaagcggatgggggccggcgatg 86  Q
    ||||||||||||| || |||||||||||||||||  || || |||| ||||||||||||||||||||||||||||||    
T  61543 agatgaaaaggactttgaaaagagagtcaaagagtgcttgaaattgccgggagggaagcggatgggggccggcgatg 61467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 83
Target Start/End: Complemental strand, 89432 - 89361
Alignment:
Q  12 atgaaaaggacgttaaaaagagagtcaaagaggactcgacattgtcgggagggaagcggatgggggccggcg 83  Q
    ||||||||||| || |||||||||||||||||  || || ||||||||||||||||||||||||||||||||    
T  89432 atgaaaaggactttgaaaagagagtcaaagagtgcttgaaattgtcgggagggaagcggatgggggccggcg 89361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 26 - 86
Target Start/End: Complemental strand, 12592085 - 12592025
Alignment:
Q  26 aaaaagagagtcaaagaggactcgacattgtcgggagggaagcggatgggggccggcgatg 86  Q
    |||| |||||||||||||  || || |||||||||||||||||||||||||||||||||||    
T  12592085 aaaatgagagtcaaagagtgcttgaaattgtcgggagggaagcggatgggggccggcgatg 12592025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 76
Target Start/End: Original strand, 5028154 - 5028220
Alignment:
Q  10 agatgaaaaggacgttaaaaagagagtcaaagaggactcgacattgtcgggagggaagcggatgggg 76  Q
    ||||||||| ||| || |||||||||||| ||||  || || ||||| |||||||||||||||||||    
T  5028154 agatgaaaatgactttgaaaagagagtcagagagttcttgaaattgttgggagggaagcggatgggg 5028220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University