View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18645_low_18 (Length: 328)
Name: NF18645_low_18
Description: NF18645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18645_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 170; Significance: 3e-91; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 125 - 310
Target Start/End: Original strand, 41531587 - 41531772
Alignment:
| Q |
125 |
attaactaaagcacattttgaaatatttccttatataccacatttgatgtgacgtttgtatcattaccctcgtcattatgaatcaatatcttcaaccctt |
224 |
Q |
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| T |
41531587 |
attaacttaaacacattttgaaatatttccttatataccacatttgatgtgacgtttgtatcattaccctcgtcatcatgaatcaataccttcaaccctt |
41531686 |
T |
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| Q |
225 |
tcttagaagtaactctagacagggcaacatacagctgaccatgagagaaaactggttgagacaggtagactccaacatgattaagc |
310 |
Q |
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| T |
41531687 |
tcttagaagtaactctagacagggcaacatacagctgaccatgagagaaaactggttgagacaggtagactccaacatgattaagc |
41531772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 13 - 125
Target Start/End: Original strand, 41529500 - 41529612
Alignment:
| Q |
13 |
aatattgtcggtattttataatatagagaaattaaggacagagaattcaatacaaaaggaaattgcaaaaagagggttcaattgaggatttccatagttt |
112 |
Q |
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| T |
41529500 |
aatattgtcggcattttataatatagagaaattaaggacagagaattcaatacaaaaggaaattgcaaaaagagggttcaattgaggatttccatagttt |
41529599 |
T |
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| Q |
113 |
aggttcatacaaa |
125 |
Q |
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| T |
41529600 |
aggttcatacaaa |
41529612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 149 - 303
Target Start/End: Original strand, 21667537 - 21667691
Alignment:
| Q |
149 |
atttccttatataccacatttgatgtgacgtttgtatcattaccctcgtcattatgaatcaatatcttcaaccctttcttagaagtaactctagacaggg |
248 |
Q |
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| T |
21667537 |
atttccttataaacgacattagatgttacattgctatcattcccttcttcatcgagaaccaatatctttaacccttttcttgacgtaactctagacaatg |
21667636 |
T |
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| Q |
249 |
caacatacagctgaccatgagagaaaactggttgagacaggtagactccaacatg |
303 |
Q |
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| T |
21667637 |
caacatacagctggccatgggaaaaaacgggttgaggcaagtaaactccaacatg |
21667691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 208 - 282
Target Start/End: Complemental strand, 27211127 - 27211053
Alignment:
| Q |
208 |
caatatcttcaaccctttcttagaagtaactctagacagggcaacatacagctgaccatgagagaaaactggttg |
282 |
Q |
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| T |
27211127 |
caatatctttaacccttttctggaagtaactctagacatcgcaacatacaactgaccatgggaaaaaactggttg |
27211053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 111 - 188
Target Start/End: Complemental strand, 43586854 - 43586778
Alignment:
| Q |
111 |
ttaggttcatacaaattaactaaagcacattttgaaatatttccttatataccacatttgatgtgacgtttgtatcat |
188 |
Q |
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| T |
43586854 |
ttaggttcatatgaataaactaaagtacattttgaaatatttctttttatacta-atttgatgtgatgtttgtatcat |
43586778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 276
Target Start/End: Original strand, 23307239 - 23307307
Alignment:
| Q |
208 |
caatatcttcaaccctttcttagaagtaactctagacagggcaacatacagctgaccatgagagaaaac |
276 |
Q |
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| T |
23307239 |
caatatcttcaacccctttctcgaagtaactcgagacatagcaacatacaactgaccatgagaaaaaac |
23307307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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