View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18645_low_24 (Length: 267)
Name: NF18645_low_24
Description: NF18645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18645_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 135; Significance: 2e-70; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 12351600 - 12351462
Alignment:
| Q |
1 |
cactaaataactatatacgatattcttcatactccatttaacttaggcctaggaattttctctccatcacttacacatactaattcaccataaacatttt |
100 |
Q |
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| T |
12351600 |
cactaaataactatatacgatattcttcatactccatttaacttaggcctaggaattttctctccatcacttacacatactaattcaccataaacatttt |
12351501 |
T |
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| Q |
101 |
attcaaattgatccaaactaatcagagacaaaatccaac |
139 |
Q |
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| T |
12351500 |
atttaaattgatccaaactaatcagagacaaaatccaac |
12351462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 139 - 250
Target Start/End: Complemental strand, 12351052 - 12350941
Alignment:
| Q |
139 |
ctggctttcattaattatgacatgctcagttagatcactaaatacattaattttatttcataagatcagaagagtatccatttattaaggtagtgttatc |
238 |
Q |
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| T |
12351052 |
ctggctttcattaattatgacatgctcagttagatcactaaatacattaattttatttcataagatcagaagagtatccatttattaaggtagtgttatc |
12350953 |
T |
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| Q |
239 |
atatcagtgata |
250 |
Q |
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||||||| |||| |
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| T |
12350952 |
atatcagcgata |
12350941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 142 - 250
Target Start/End: Complemental strand, 12338393 - 12338283
Alignment:
| Q |
142 |
gctttcattaattatgacatgctcagttaga-tcactaaatacatt-aattttatttcataagatcagaagagtatccatttattaaggtagtgttatca |
239 |
Q |
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|||||||||||||| |||||||||||||| | |||||||||||| | |||||| ||||||||||||||||||||| | |||| || |||| |||||| | |
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| T |
12338393 |
gctttcattaattaggacatgctcagttaaaatcactaaatacaatgaattttctttcataagatcagaagagtaatcgtttactagggtattgttatga |
12338294 |
T |
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| Q |
240 |
tatcagtgata |
250 |
Q |
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| T |
12338293 |
tatcagtgata |
12338283 |
T |
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