View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18645_low_25 (Length: 259)
Name: NF18645_low_25
Description: NF18645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18645_low_25 |
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| [»] scaffold0903 (1 HSPs) |
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Alignment Details
Target: scaffold0903 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: scaffold0903
Description:
Target: scaffold0903; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 31 - 235
Target Start/End: Original strand, 1377 - 1581
Alignment:
| Q |
31 |
tacatagttaatcaaaaaggctattgttcaagccattacataccattgtaaagggatttataacccattaatagcaaaaagggcattgttcaagccacat |
130 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1377 |
tacatacttaatcaaaaaggctattgttcaagccattacataccattgtaaagggatttataacccattaatagcaaaaagggcattgttcaagccacat |
1476 |
T |
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| Q |
131 |
tagaaaccaaataaaaggcatttctcagtcactaatagcaaaatgacaatttatcaaccaatacaagacagaattaataatggttgatctaaggcttcca |
230 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
1477 |
tacaaaccaaataaaaggcatttctcagtcactaatagcaaaatgacaattttccaaacaatacaagacagaattaataatggttgatctaaggcttcca |
1576 |
T |
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| Q |
231 |
caaag |
235 |
Q |
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||||| |
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| T |
1577 |
caaag |
1581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 157; Significance: 1e-83; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 31 - 235
Target Start/End: Original strand, 21717833 - 21718037
Alignment:
| Q |
31 |
tacatagttaatcaaaaaggctattgttcaagccattacataccattgtaaagggatttataacccattaatagcaaaaagggcattgttcaagccacat |
130 |
Q |
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|||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21717833 |
tacatacttaataaaaaaggctattgttcaagccattacacaccattgtaaagggatttataacccattaatagcaaaaagggcattgttcaagccacat |
21717932 |
T |
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| Q |
131 |
tagaaaccaaataaaaggcatttctcagtcactaatagcaaaatgacaatttatcaaccaatacaagacagaattaataatggttgatctaaggcttcca |
230 |
Q |
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| T |
21717933 |
tacaaactaaataaaaggcatttctcagtcactaatagcaaaatgacatttttccaagcaatacaagacaaaattgataacggttgatctaaggcttcca |
21718032 |
T |
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| Q |
231 |
caaag |
235 |
Q |
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||||| |
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| T |
21718033 |
caaag |
21718037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 39 - 152
Target Start/End: Complemental strand, 20655843 - 20655740
Alignment:
| Q |
39 |
taatcaaaaaggctattgttcaagccattacataccattgtaaagggatttataacccattaatagcaaaaagggcattgttcaagccacattagaaacc |
138 |
Q |
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|||||||||||||||||||||||||||||| |||| | |||||||||| ||||||||| |||| ||||||||||||||||||||| ||||| |
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| T |
20655843 |
taatcaaaaaggctattgttcaagccattagatacaactgtaaagggagttataaccc----------aaaaaggcattgttcaagccacattacaaacc |
20655754 |
T |
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| Q |
139 |
aaataaaaggcatt |
152 |
Q |
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|||||||||||||| |
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| T |
20655753 |
aaataaaaggcatt |
20655740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 112 - 167
Target Start/End: Complemental strand, 20655745 - 20655690
Alignment:
| Q |
112 |
ggcattgttcaagccacattagaaaccaaataaaaggcatttctcagtcactaata |
167 |
Q |
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|||||||||||||||| | || ||||||||||||||||||||||||| |||||||| |
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| T |
20655745 |
ggcattgttcaagccaaaatacaaaccaaataaaaggcatttctcagccactaata |
20655690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 73
Target Start/End: Original strand, 21717797 - 21717839
Alignment:
| Q |
31 |
tacatagttaatcaaaaaggctattgttcaagccattacatac |
73 |
Q |
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|||||| || ||||||||||||||||||||||||||||||||| |
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| T |
21717797 |
tacatactttatcaaaaaggctattgttcaagccattacatac |
21717839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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