View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18645_low_30 (Length: 221)
Name: NF18645_low_30
Description: NF18645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18645_low_30 |
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Alignment Details
Target: chr6 (Bit Score: 102; Significance: 8e-51; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 36 - 169
Target Start/End: Original strand, 13887396 - 13887529
Alignment:
| Q |
36 |
ccttaaatgaaataattaaagaggaagttgaaaactaactagtttagaaaagataatagagtctcgtcgcaaatgaataggatttgtgtggactatggag |
135 |
Q |
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| T |
13887396 |
ccttaaatgaaataattagagaggaagttgataactaactagtttagaaaagataatagattctcgtcgtagatgaataggatttgtatggactgtggag |
13887495 |
T |
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| Q |
136 |
aacatgtatagaagtagcataaggtggttagacc |
169 |
Q |
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| T |
13887496 |
aacatgtatagaagtagcataaggtggtgagacc |
13887529 |
T |
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Target: chr4 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 36 - 181
Target Start/End: Original strand, 52842104 - 52842249
Alignment:
| Q |
36 |
ccttaaatgaaataattaaagaggaagttgaaaactaactagtttagaaaagataatagagtctcgtcgcaaatgaataggatttgtgtggactatggag |
135 |
Q |
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|||| ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |||| | ||||||||||||| || ||||| ||||| |
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| T |
52842104 |
ccttgaatgaaataattagagaggaagttgaaaactaactagtttagaaaagatgatagagtcttgtcgtagatgaataggatttatgcggactgtggag |
52842203 |
T |
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| Q |
136 |
aacatgtatagaagtagcataaggtggttagaccgaatggaagata |
181 |
Q |
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| T |
52842204 |
aacatgtataaaattagcataaggaggttagaccaaatggaagata |
52842249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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