View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18645_low_4 (Length: 629)
Name: NF18645_low_4
Description: NF18645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18645_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 380; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 24 - 419
Target Start/End: Original strand, 35447495 - 35447890
Alignment:
| Q |
24 |
tgatacaaaacctataaagcaacaaacaacacaagatgattctgagagcttatatcacagcctggtcagggacaaaaaagagacagatcaaagcatctga |
123 |
Q |
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| T |
35447495 |
tgatacaaaacctataaagcaacaaacaacacaagatgattctgagagcttatatcacagcctggtcagggacaaaaaagaaacagatcaaagcatctga |
35447594 |
T |
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| Q |
124 |
caggaagtatagaaatcgataatgacgacaatgatcacatgaattacaaaaaagtcatagctagtcctgaaaaataaagattgaatgacaataaagactt |
223 |
Q |
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| T |
35447595 |
caggaagtatagaaatcgataatgacgacaatgatcgcatgaattacaaaaaagtcatagctagtcctgaaaaataaagattgaatgacaataaagactt |
35447694 |
T |
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| Q |
224 |
gtggctaagcggctcactcaaagagaatgcattgctttcattgaaatatattttcctgttgtgaaacatacaagtattggagggaatgtatcacttgttg |
323 |
Q |
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| T |
35447695 |
gtggctaaggggctcactcaaagagaatgcattgctttcattgaaatatattttcctgttgtgaaacatacaagtattggagggaatgtatcacttgttg |
35447794 |
T |
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| Q |
324 |
taaaggagaatactttgatggataatatatataaagaaacatgacatcaaatgattagattttgagtactatactaataaagttatggaatatgga |
419 |
Q |
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| T |
35447795 |
taaaggagaatactttgatggataatatatataaagtaacatgacatcaaatgattagattttgagtactatactaataaagttatggaatatgga |
35447890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 519 - 613
Target Start/End: Original strand, 35447991 - 35448085
Alignment:
| Q |
519 |
tatcccataatcatctacaccatcacacggaagtgttcaaattacattgtcttcacttggaggtagcaaactattaaaatatcaaagcatgtgtt |
613 |
Q |
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| T |
35447991 |
tatcccataatcacctacaccatcacacggaagtgttcaaattacattgtcttcacttggaggtagcaaactattaaaatatcaaagcatgtgtt |
35448085 |
T |
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