View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18645_low_5 (Length: 619)
Name: NF18645_low_5
Description: NF18645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18645_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 556; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 556; E-Value: 0
Query Start/End: Original strand, 20 - 610
Target Start/End: Complemental strand, 52573731 - 52573136
Alignment:
| Q |
20 |
gtagggattccggtacaacctatggcagaataattgtgaaattgatgccacatcactacaatacaacaacactcaaaggaaagaatggctttgagatatg |
119 |
Q |
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| T |
52573731 |
gtagggattccggtacaacctatggcagaataattgtgaaattgatgccacatcactacaatacaacaacactcaaaggaaagaatggctttgagatatg |
52573632 |
T |
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| Q |
120 |
agtcacatcatctaacaactcagacactcctaacgaataccataatgaaaaaatagtatgttaaatgtacaaaatgaacaacaaaaccaaagtaattgtc |
219 |
Q |
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| T |
52573631 |
agtcgcatcatctaacaactcagacactcctaacgaataccataatgaaaaaatagtatgttaaatgtacaaaatgaacaacaaaaccgaagtaattgtc |
52573532 |
T |
|
| Q |
220 |
ccaa-----gatcaaaactgatttctataacctgaaagcaccgcaccttatcaagacaagtgttgaattgatatgcttgcgtttgaggtagatactgatg |
314 |
Q |
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| T |
52573531 |
ccaactacagatcaaaactgatttctataacctgaaagcaccgcaccttatcaagacaagtgttgaattgatatgcttgcgtttgaggtagatactgatg |
52573432 |
T |
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| Q |
315 |
gaatagaatggcaataataaaatttgaaagagaaaggtaacctgaagcacttgggaagcatatctctgcgcagttgcatcttgctcagcaaatctgcgag |
414 |
Q |
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| T |
52573431 |
gaatagaatggcaataataaaatttcaaagagaaaggtaacctgaagcacttgggaagcatatctctgtgcagttgcatcttgctcagcaaatctgcgag |
52573332 |
T |
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| Q |
415 |
catcctctgtaaccttttgttcttgctctacccgcatcaagacctatcagaaataaattcttacattgtcagtgacacaacctatttttcctaaagaaag |
514 |
Q |
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| T |
52573331 |
catcctctgtaaccttttgttcttgctctacccgcatcaagacctatcagaaataaattcttacattgtcagtgacacaacctattttgcctaaagaaag |
52573232 |
T |
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| Q |
515 |
tataaaattatgagtaaaaatgaaacctgaagcattgcagtttcctgttcttgtttatcagaaagtgcttgtcgaagctcagcaacctcttcttct |
610 |
Q |
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| T |
52573231 |
tataaaattatgagtaaaaatgaaacctgaagcattgcagtttcctgttcttgtttatcagaaagtgcttgtcgaagctcagcaacctcttcttct |
52573136 |
T |
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